PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G122400.1
Common NamePOPTR_0003s12240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 666aa    MW: 74221.7 Da    PI: 5.8508
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G122400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.32e-1292836501374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv+ L++c+e +  ++ + +++++a+l elasp+g p+ Rlaay+teALa r++r +++++++ +p+e + +  +++ +al+l+++vsPi+
  Potri.003G122400.1 283 LVSFLTACVEEIGLKNIASINHFIAKLGELASPKGIPISRLAAYYTEALALRVTRIWPHIFHITAPRELD-RVDDDSGTALRLLNQVSPIP 372
                         5788***************************************************************998.5678888999********** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf h+taN+++l+a+eg++rvHiiDfdi qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v
  Potri.003G122400.1 373 KFIHFTANEMLLRAFEGKDRVHIIDFDIRQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-V 458
                         **********************************************************....***************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         ++rled++l++L+vk++E++a+n+++q+h++l +    +   +++L l++s++P++v ++eqea+hn++++ +r++++l+yysa+fds+++
  Potri.003G122400.1 459 VDRLEDVRLWMLHVKERECVAINCIFQMHKTLYDGSGGA--LRDFLGLIRSTNPTIVLLAEQEAEHNAPNLETRVCNSLKYYSAIFDSIDS 547
                         *******************************95543333..589*********************************************** PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlg 361
                         +lp +s  rik+E++  +rei+nvvaceg++r erhe++ kW++ +e+ G++ v ++e+++ qa++ll++++ d y+v+++   +++l+l 
  Potri.003G122400.1 548 SLPFNSPVRIKLEEM-YAREIRNVVACEGSDRHERHESFDKWKKLMEQGGLRCVGIDEREMLQAQMLLKMYSCDSYKVKKQgheEAALTLS 637
                         ***************.89******************************************************999****6555488899** PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W d+pL++vSaW+
  Potri.003G122400.1 638 WLDQPLYTVSAWT 650
                         ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.027257627IPR005202Transcription factor GRAS
PfamPF035147.0E-127283650IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE SPAQFQACHY QLPSMSTQRL DLPCTFSRKE SSRSQPMRPV  60
GVGLAVDKSL ESKTSSCSLM QNIRLPPLAT SNQSVKDEFW EKGKSLKRFA EQSVDESSFN  120
RAKRKKGNND NGKSDDICEG DSLSLGQLGS GNSWFQPSLE VPRSLNPQQF PFSLTFSGDE  180
ERVCFVPSEV ISPPLPLSNN PWVDSVITEI ADLGEKYGES SQRPVKEASG SSTSSESQSL  240
GLRLSENVVE HEVGKGSSNP PHPQEGAVEA AEDDQREHQG FELVSFLTAC VEEIGLKNIA  300
SINHFIAKLG ELASPKGIPI SRLAAYYTEA LALRVTRIWP HIFHITAPRE LDRVDDDSGT  360
ALRLLNQVSP IPKFIHFTAN EMLLRAFEGK DRVHIIDFDI RQGLQWPSLF QSLASRTNPP  420
SHVRITGIGE SKQELNETGD RLAGFAEALN LPFEFHPVVD RLEDVRLWML HVKERECVAI  480
NCIFQMHKTL YDGSGGALRD FLGLIRSTNP TIVLLAEQEA EHNAPNLETR VCNSLKYYSA  540
IFDSIDSSLP FNSPVRIKLE EMYAREIRNV VACEGSDRHE RHESFDKWKK LMEQGGLRCV  600
GIDEREMLQA QMLLKMYSCD SYKVKKQGHE EAALTLSWLD QPLYTVSAWT PLDIAGSSTS  660
FSQPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-702666511379Protein SCARECROW
5b3h_D1e-702666511379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.117280.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G122400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303565.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLB9GW730.0B9GW73_POPTR; GRAS family protein
STRINGPOPTR_0003s12240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Representative plantOGRP55071521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein