PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G121200.1
Common NamePOPTR_0003s12120g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 177aa    MW: 18835.2 Da    PI: 4.7978
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G121200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.9e-151461355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+G+r  +++g+Wv+eIr+p++   ++r++lg+f  +e+Aa+a++ a ++l+g
  Potri.003G121200.1 14 YRGIR--SRSGKWVSEIREPRK---TTRIWLGTFPKPEMAAAAYDVAVLALKG 61
                        99**6..678*********843...5**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-171371IPR016177DNA-binding domain
SMARTSM003801.8E-261377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-261370IPR001471AP2/ERF domain
PROSITE profilePS5103219.731369IPR001471AP2/ERF domain
PfamPF008478.0E-81461IPR001471AP2/ERF domain
PRINTSPR003672.8E-61425IPR001471AP2/ERF domain
CDDcd000185.11E-271471No hitNo description
PRINTSPR003672.8E-65171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MATTSSSSKR HPMYRGIRSR SGKWVSEIRE PRKTTRIWLG TFPKPEMAAA AYDVAVLALK  60
GADAVLNFPS SVGTYPVPAS TSPTDIRNAA NAAAALKKAE MSYNEALVEQ PRNDCAVGTF  120
LASGGEEFVD EEALFDMPNL LVDMAGGMLL SPPRITPSPS DDSQGTSDGE SLWSYS*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G121200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453070.11e-127ethylene-responsive transcription factor ERF027
SwissprotQ9FJ902e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLB9GW611e-125B9GW61_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12120.11e-126(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-46ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]