PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G118600.1
Common NamePOPTR_0003s11850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 291aa    MW: 32978 Da    PI: 5.8031
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G118600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.35.3e-1527118187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+++ + +L++a  ++  +l+rg+l++++W++v++++     + ++  r+ +qCk++++ ++k+yk +k +  + + + +s++p+f++l+
  Potri.003G118600.1  27 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTYRTDVQCKNRIDTIKKKYKIEKSHVVSSNGTLTSSWPFFERLD 117
                         7**************************************9999999999***********************99998888999******98 PP

            trihelix  87 a 87 
                         a
  Potri.003G118600.1 118 A 118
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-2625119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGDLIESSSV TPSTTPHSRP LPIREDCWSE EATSTLVDAW GRRYLELNRG NLRQKDWQDV  60
ADAVNALHGH TKKTYRTDVQ CKNRIDTIKK KYKIEKSHVV SSNGTLTSSW PFFERLDALI  120
GSNFNSSGKK HLSPSPPVAL PLPPSYRRTP QVSSTPPPQP PALAVALPQK RPLPVDDDYF  180
RRNYSAMAAA AAAVESDSEE DEDEEFEGGE RERAEEDVEG EGIKRLALAI ERFGEVYERV  240
ESEKLKQMVD LEKQRMKFAK DLEMERMRIF TETQVQLEKI KKGKRAPEDY *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.118680.0bud
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G118600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303549.10.0trihelix transcription factor ASIL2
TrEMBLB9GW350.0B9GW35_POPTR; Uncharacterized protein
STRINGPOPTR_0003s11850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-40sequence-specific DNA binding transcription factors