PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G111900.2 | ||||||||
Common Name | POPTR_0003s11120g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 305aa MW: 34405.9 Da PI: 9.9495 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.9 | 1.6e-31 | 234 | 292 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D ++WrKYGqK++kgs++prsYY+C+s+ gCp++k+vers edp+++++ YegeHnh+k Potri.003G111900.2 234 DDHSWRKYGQKPIKGSPYPRSYYKCSSKrGCPARKHVERSLEDPTMLVVAYEGEHNHSK 292 99*************************99****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.8E-16 | 190 | 230 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.5E-32 | 223 | 292 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.459 | 227 | 293 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-26 | 230 | 291 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-37 | 232 | 292 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-27 | 234 | 290 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MTPRWDFKIH EVAQSSFRHA HNLFSCISDK NQKRSIQEVS LIAQDAVNEF RNLVRILDDS 60 EQSDCKRIRK GPLPHAHDIN PVELMDSPNS VSKSSDHNFS QPNRQLFPLQ SILSTTSLTH 120 VNTLNLYREK QKKSKDNVDV KNNLIMGLNH SPLQTSAYFL NSDGSGRIFH HSSSEGLPSQ 180 DDSSIFSKSK SEETSAKCLA STGGCHCSKR RKSRIKKIIK VPALSTKLAD IPPDDHSWRK 240 YGQKPIKGSP YPRSYYKCSS KRGCPARKHV ERSLEDPTML VVAYEGEHNH SKIAFQSPNM 300 MLHI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 228 | 290 | 10 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G111900.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452726.1 | 0.0 | probable WRKY transcription factor 17 | ||||
TrEMBL | A0A2K2B5B2 | 0.0 | A0A2K2B5B2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s11120.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 3e-45 | WRKY DNA-binding protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G111900.2 |
Entrez Gene | 7465520 |