PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G111900.1
Common NamePOPTR_0003s11120g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 311aa    MW: 35070.7 Da    PI: 9.9495
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G111900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.91.6e-31240298360
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                         D ++WrKYGqK++kgs++prsYY+C+s+ gCp++k+vers edp+++++ YegeHnh+k
  Potri.003G111900.1 240 DDHSWRKYGQKPIKGSPYPRSYYKCSSKrGCPARKHVERSLEDPTMLVVAYEGEHNHSK 298
                         99*************************99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.1E-12190236IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.3E-32229298IPR003657WRKY domain
PROSITE profilePS5081129.459233299IPR003657WRKY domain
SuperFamilySSF1182902.22E-26236297IPR003657WRKY domain
SMARTSM007744.1E-37238298IPR003657WRKY domain
PfamPF031066.4E-27240296IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTPRWDFKIH EVAQSSFRHA HNLFSCISDK NQKRSIQEVS LIAQDAVNEF RNLVRILDDS  60
EQSDCKRIRK GPLPHAHDIN PVELMDSPNS VSKSSDHNFS QPNRQLFPLQ SILSTTSLTH  120
VNTLNLYREK QKKSKDNVDV KNNLIMGLNH SPLQTSAYFL NSDGSGRIFH HSSSEGLPSQ  180
DDSSIFSKSK SEETSAKCLA STGGCHCSKR RQVIPNLKSR IKKIIKVPAL STKLADIPPD  240
DHSWRKYGQK PIKGSPYPRS YYKCSSKRGC PARKHVERSL EDPTMLVVAY EGEHNHSKIA  300
FQSPNMMLHI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-212342961071WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G111900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452726.10.0probable WRKY transcription factor 17
TrEMBLA0A2K2B5B20.0A0A2K2B5B2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s11120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-49WRKY DNA-binding protein 21