PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G110800.1
Common NamePOPTR_0003s11020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 755aa    MW: 83795.6 Da    PI: 6.8431
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G110800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.93.4e-8940075313374
                GRAS  13 ssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                         ++++++  +alL +l +      p+g+p++R+a+yf+eAL+  ++ + +++  a pp++ ++ +++ +++a+k++sevsP+++f ++t+Nq
  Potri.003G110800.1 400 HQHQHQHQHALLDQLYKAaelLFPTGKPLHRAAFYFKEALQLLILMNNNSV-TAPPPRSPTPFDVIFKMSAYKVLSEVSPLIQFVNFTCNQ 489
                         556677778888888766333679*********************855555.567888888899*************************** PP

                GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dl 189
                         a+leav+ ++r+Hi+Dfdi+ G+QW++++q+L  R++g  sl+ T+++sp++++  el+ ++++L++fA+e+g++fe +v+  ++le  + 
  Potri.003G110800.1 490 ALLEAVDDADRIHIVDFDIGFGAQWASFMQELP-RNRGGRSLKTTAFASPSTHHPVELSLMRDNLTQFANEIGLSFELDVINFDSLEqhCY 579
                         ********************************7.677889****************************************97776651156 PP

                GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                         +l  +r++++Ea++Vn+ +   +   ++ +l+s    +L+++k+lsPk+vv  ++ +d+++ +F +++l+al+ y+ l++sl+a   ++++
  Potri.003G110800.1 580 SLPFFRTSEHEAVVVNFPIWCSSN--QPSALPS----LLRFIKQLSPKIVVSLDRGCDRSDLPFPQHILHALQSYTHLLESLDAV-NATTD 663
                         778889999*********955544..4555555....*********************************************887.68899 PP

                GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                         + +k+Er+ll+++i++ v  + ++    + ++ +W+  + +aGF+pv++s+++++qa++++++++++g++ve +++ lvl W++r+L+s+S
  Potri.003G110800.1 664 DVNKIERFLLQPRIESTVLGRLRA----TDKMPNWKTIFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVERQQALLVLFWQRRELMSAS 750
                         9******************99988....8999*********************************************************** PP

                GRAS 372 aWr 374
                         aWr
  Potri.003G110800.1 751 AWR 753
                         **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.185362733IPR005202Transcription factor GRAS
PfamPF035141.2E-86400753IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MPFRLQAKGG VDFDGFASVC SQQETWTQRQ RQQLLEVNCF ASKEPNSVLH MRRSPSPPTS  60
VSTLSSSSNG GAGGNTSDKT ATITATDKVV NPVNNERKDE WATELQPFPS GLEFVSTGER  120
CGLGLEDWEN MLSEPSQEQS LLRWIAGDVD DTQFGLKQLL QSGSSQLEFD GNVGGGSGVG  180
GLGIVDQGPG FESLSGIPGG VSSIGTNLAP FPGPGVSNIG SGLVAPSSSS GLINYKNVGF  240
GSNNNSSVQS PVFSSPTNSV SLPFSLPPGM VYHQNQLQQI EAPEEKPHIL NPQILMNQQQ  300
SHNPRIRNPN LFLQLPFYQQ ENRPLHSQLK RHNSGGIDPI SHVIPKLPFS DPGQELLLRK  360
HQQQQLGFPQ RVQFLHQQLQ QKPLVVKKED LGTQHYQHQH QHQHQHQHAL LDQLYKAAEL  420
LFPTGKPLHR AAFYFKEALQ LLILMNNNSV TAPPPRSPTP FDVIFKMSAY KVLSEVSPLI  480
QFVNFTCNQA LLEAVDDADR IHIVDFDIGF GAQWASFMQE LPRNRGGRSL KTTAFASPST  540
HHPVELSLMR DNLTQFANEI GLSFELDVIN FDSLEQHCYS LPFFRTSEHE AVVVNFPIWC  600
SSNQPSALPS LLRFIKQLSP KIVVSLDRGC DRSDLPFPQH ILHALQSYTH LLESLDAVNA  660
TTDDVNKIER FLLQPRIEST VLGRLRATDK MPNWKTIFAS AGFSPVTFSN FTETQAECVV  720
KRTPVRGFHV ERQQALLVLF WQRRELMSAS AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3042475336375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G110800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454025.10.0LOW QUALITY PROTEIN: scarecrow-like protein 27
TrEMBLA0A2K2B5930.0A0A2K2B593_POPTR; Uncharacterized protein
STRINGPOPTR_0003s11020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132692130
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-110GRAS family protein