PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G110300.5

Common Name

POPTR_0003s10970g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 851aa MW: 98424.7 Da PI: 8.6945

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G110300.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.3	4.1e-26	98	207	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkkek. 72 +fY+eYAk+vGFs+ +++s++s+ +g++++++fvC+++g+++++++ +++ r +++ ++t+Cka+++vk+++ Potri.003G110300.5 98 SFYKEYAKSVGFSTITKASRRSRISGKFIDAKFVCTRYGTKRDTSTIelpqpvsnadaatslpvkRKRGRINQSWSKTDCKACMHVKRRQq 188 5*************************************99988879**********998888899**************99 PP FAR1 73 dgkwevtkleleHnHelap 91 dg+w+v ++ +eHnHe++p Potri.003G110300.5 189 DGRWVVRSFIKEHNHEIFP 207 **************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-24	98	207	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-33	326	418	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.311	605	642	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.2E-7	617	644	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	1.1E-6	618	640	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009585	Biological Process	red, far-red light phototransduction
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 851 aa Download sequence Send to blast
MGIDLEQPSG EYHKEDRRPN VNVNTVDGGD GGHERDQIIV NSPDIGGNGC EKTGTVINGR 60 VLDGRKKPNA GDGINLNSVK DAEPHDGMEF ESKDEAFSFY KEYAKSVGFS TITKASRRSR 120 ISGKFIDAKF VCTRYGTKRD TSTIELPQPV SNADAATSLP VKRKRGRINQ SWSKTDCKAC 180 MHVKRRQQDG RWVVRSFIKE HNHEIFPDQA YYFRGHRNLN LGNDNVDALH AIRARTKKLY 240 VAMSRQSSGH RKHENLKGGV TNPSGNTKHL ALDEGDAQAM LDHFMHMQDE NPNFFYAIDL 300 NEEQQLRNVF WVDAKGRLDY GNFGDVIFFD TTYLKNEYKL PFAPFIGVNH HFQFLLLGCA 360 LVADETKTTY VWLMRAWLRA MGGHAPRVIL TDQDNALKEA IQEVFPNSRH CFCLWHVFSK 420 IPEKLSYVTR QHENFMLKFK KCIFKSWTSE QFEKRWWKMV EIFNLRNDVW FQSLYEDRQR 480 WIPVFMIDNF LAGMSTTQRS ESINTLFDRY MQRKTTLKEF LELQKAMLQE KFEEEAKADF 540 ETWHKQPGLK SPSPFGKQMA SIYTHAIFKK FQVEVLGVVA CHPRKETEDG ETQTFKVQDF 600 EDNQYFIVVW NEMTSYLSCS CRLFEFNGFL CRHVLIVMQM SGLHSIPSQY ILKRWTKDAK 660 SRQIMREQSD VVESRVQRYN DLCRRAFKLG DEGSLSQESY NIAFNALEEA LRKCESVNNS 720 IQNIIEPTSP PSNGPLDYDE VNQAHGATKT NKKKDTSRKK QVHPDPEVIP IRMHDSWQQM 780 EQLNSRVPTL DGYFGSQQTG QGMGQLNATA PNDDAHYMMQ QRMQGMVCYS LVFSLKKFVL 840 YRAMMLLRKF *

Sequence ? help Back to Top

Protein Sequence Length: 851 aa Download sequence Send to blast

MGIDLEQPSG EYHKEDRRPN VNVNTVDGGD GGHERDQIIV NSPDIGGNGC EKTGTVINGR  60
VLDGRKKPNA GDGINLNSVK DAEPHDGMEF ESKDEAFSFY KEYAKSVGFS TITKASRRSR  120
ISGKFIDAKF VCTRYGTKRD TSTIELPQPV SNADAATSLP VKRKRGRINQ SWSKTDCKAC  180
MHVKRRQQDG RWVVRSFIKE HNHEIFPDQA YYFRGHRNLN LGNDNVDALH AIRARTKKLY  240
VAMSRQSSGH RKHENLKGGV TNPSGNTKHL ALDEGDAQAM LDHFMHMQDE NPNFFYAIDL  300
NEEQQLRNVF WVDAKGRLDY GNFGDVIFFD TTYLKNEYKL PFAPFIGVNH HFQFLLLGCA  360
LVADETKTTY VWLMRAWLRA MGGHAPRVIL TDQDNALKEA IQEVFPNSRH CFCLWHVFSK  420
IPEKLSYVTR QHENFMLKFK KCIFKSWTSE QFEKRWWKMV EIFNLRNDVW FQSLYEDRQR  480
WIPVFMIDNF LAGMSTTQRS ESINTLFDRY MQRKTTLKEF LELQKAMLQE KFEEEAKADF  540
ETWHKQPGLK SPSPFGKQMA SIYTHAIFKK FQVEVLGVVA CHPRKETEDG ETQTFKVQDF  600
EDNQYFIVVW NEMTSYLSCS CRLFEFNGFL CRHVLIVMQM SGLHSIPSQY ILKRWTKDAK  660
SRQIMREQSD VVESRVQRYN DLCRRAFKLG DEGSLSQESY NIAFNALEEA LRKCESVNNS  720
IQNIIEPTSP PSNGPLDYDE VNQAHGATKT NKKKDTSRKK QVHPDPEVIP IRMHDSWQQM  780
EQLNSRVPTL DGYFGSQQTG QGMGQLNATA PNDDAHYMMQ QRMQGMVCYS LVFSLKKFVL  840
YRAMMLLRKF *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G110300.5

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024453596.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A2K2B585	0.0	A0A2K2B585_POPTR; Uncharacterized protein
STRING	POPTR_0003s10970.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.003G110300.5
Entrez Gene	18097012

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]