PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G100100.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 284aa MW: 31744.8 Da PI: 9.8786

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G100100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.6	1.2e-32	27	81	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Potri.003G100100.1 27 RPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 81 59****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.231	24	84	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-31	24	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-16	27	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.4E-24	28	82	IPR006447	Myb domain, plants
Pfam	PF00249	8.5E-9	29	80	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-22	127	173	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MEKTTFGGGG GSYPYENGVV MMTRDPRPRL RWTADLHDRF VDAVTKLGGP DKATPKSVLR 60 LMGLKGLTLY HLKSHLQKYR LGQQARRQNN TEQSKESRGA SYVNFSKGSS GTSTSSPRID 120 EEQGEISVAE ALNCQIEVQK TLQEKLEVQK KLQMRIEAQG KYLQAILEKA QKSLSQNLND 180 DSNGKLKATR AHLTGFNSAV YSLMENLNAE DRKPSITDLK GINMKENGPA MHIQREGQTQ 240 ETKDVKHHLQ GDSIHFDLNT KGNYDFVSAN GSELELKMLS YRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	27	80	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G100100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452915.1	0.0	myb family transcription factor PHL11
Swissprot	C0SVS4	9e-85	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2K2B4M5	0.0	A0A2K2B4M5_POPTR; Uncharacterized protein
STRING	POPTR_0003s09940.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-80	G2-like family protein

Link Out ? help Back to Top
Phytozome	Potri.003G100100.1

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]