PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G096300.3
Common NamePOPTR_0003s09490g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 378aa    MW: 42575.3 Da    PI: 8.3727
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G096300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.8e-32200253255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Potri.003G096300.3 200 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 253
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15197253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28198253IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23200253IPR006447Myb domain, plants
PfamPF002492.5E-7201252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PTSTWRRTEE EMDLGFWTRA LDSRNSISSM AKPDTCFELS  60
LSNPKVSEPN SNHFHNILQN SNNCNGNNLF HSFQQNQYTH HHHQQNHLHN HHPVLFQQQQ  120
QQGLSQELGF LRPIRGIPVY QNPPSPFPFS QQTFDNTCSQ ASSLAANNSS ATSISPYQSQ  180
GSMRSRFMSR FPAKRSMRAP RMRWTTTLHA RFVHAVELLG GHERATPKSV LELMDVKDLT  240
LAHVKSHLQM YRTVKTTDRA AAPSALSDVF DNGSSGDTSE DLVFDIENPR RSEMSMQQGR  300
PNAHQDKDYQ ALWSNSSREA WLHGKLKDSD GNLPPLEQKG MDPKCLSYEK ISDVSSSTVS  360
GTSPKKPNLE FTLGRPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-17201255458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-17201255458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-17201255458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-17201255458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-17201255458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-17201255458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-17201255458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-17201255458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G096300.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303435.20.0probable transcription factor KAN2 isoform X2
SwissprotQ9C6161e-96KAN2_ARATH; Probable transcription factor KAN2
TrEMBLB9GZJ10.0B9GZJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09490.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-72G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]