PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G090300.1
Common NamePOPTR_0003s08890g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LSD
Protein Properties Length: 156aa    MW: 16016.8 Da    PI: 7.7286
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G090300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.25.6e-133862125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL +P GA+sV+Ca+C++V
  Potri.003G090300.1 38 CSGCRNLLLFPVGATSVCCAVCNAV 62
                        ************************9 PP
2zf-LSD146.65.4e-1577101125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         CggC+tlL+Y rGA+sV+C++C+tV
  Potri.003G090300.1  77 CGGCHTLLMYIRGATSVQCSCCHTV 101
                         ************************9 PP
3zf-LSD141.71.9e-13115139125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Cr lL+Y +GA+sV+Ca+C++V
  Potri.003G090300.1 115 CGNCRMLLMYQYGARSVKCAVCNFV 139
                         ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.9E-123565IPR005735Zinc finger, LSD1-type
PfamPF069437.3E-103862IPR005735Zinc finger, LSD1-type
SuperFamilySSF486956.59E-538136IPR011031Multihaem cytochrome
TIGRFAMsTIGR010539.7E-1574103IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-1277101IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.1E-12112140IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12115139IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPYAPTPP PPPPPPPAAN GAQSQLVCSG CRNLLLFPVG ATSVCCAVCN  60
AVTAVPPPGT EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM  120
LLMYQYGARS VKCAVCNFVT PIGVSTSATE EKFNA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.102040.0bud
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G090300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3948501e-108FQ394850.1 Vitis vinifera clone SS0AFA19YD11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385636.11e-106protein LOL1
RefseqXP_024452725.11e-106protein LOL1
SwissprotQ93ZB13e-80LOL1_ARATH; Protein LOL1
TrEMBLU5GIW91e-105U5GIW9_POPTR; LSD family protein
STRINGPOPTR_0003s08890.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-66lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]