PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G080600.1
Common NamePOPTR_0003s07850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 321aa    MW: 35408.3 Da    PI: 5.502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G080600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-20176226255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+t  eAaka+++a+ kl+g
  Potri.003G080600.1 176 HYRGVRRRP-WGKYAAEIRDP---NrRGSRVWLGTFDTDLEAAKAYDRAAFKLRG 226
                         7********.**********9...4334**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-31175235IPR001471AP2/ERF domain
SMARTSM003804.6E-35176240IPR001471AP2/ERF domain
PfamPF008471.3E-14176226IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-22176235IPR016177DNA-binding domain
CDDcd000186.93E-30176234No hitNo description
PROSITE profilePS5103224.526176234IPR001471AP2/ERF domain
PRINTSPR003671.6E-13177188IPR001471AP2/ERF domain
PRINTSPR003671.6E-13216236IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
METDQTQQVS SALESIKQHL LGDLLSPVAT SSASFYQFST NSATSTSLQC ETTSCSSSDF  60
STALPDFFGS LLEFTSVLSP SQENNTNIFE FEPKPEIIDL FTPTPLNSTS HINFQSSSSS  120
TGSSGGKPKP QVQTARKRSL KISLPSKKPE WIQFSSNPNP QTVEDNSGVA AQEIRHYRGV  180
RRRPWGKYAA EIRDPNRRGS RVWLGTFDTD LEAAKAYDRA AFKLRGSKAI LNFPLEAGRC  240
EEESERKRSR EGGVEEREDV KRVMTVVKRE EPETEGDIPL TPSSWTAFWD GGDTKDVFNV  300
PPLSPLSPHP PLGFPQLTVI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-28175235161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G080600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2209730.0JX220973.1 Populus x canadensis cultivar Nanling895 ERF5-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304300.20.0ethylene-responsive transcription factor 6
SwissprotO803415e-58EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A3N7EN160.0A0A3N7EN16_POPTR; Uncharacterized protein
STRINGPOPTR_0003s07850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]