PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G079300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 283aa    MW: 31745.3 Da    PI: 8.2571
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G079300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.37.7e-1895146156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         + y+GVr +  +g+Wv+eIr p++   + r++lg+f t+e+Aa+a++ a++ ++g+
  Potri.003G079300.1  95 PSYRGVRMRQ-WGKWVSEIRQPKK---KSRIWLGTFSTPEMAARAHDVAALTIKGH 146
                         57*****998.**********854...6***********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1295146IPR001471AP2/ERF domain
CDDcd000184.81E-3395155No hitNo description
PROSITE profilePS5103222.73496153IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2196154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-3296154IPR001471AP2/ERF domain
SMARTSM003801.2E-3796159IPR001471AP2/ERF domain
PRINTSPR003673.0E-1097108IPR001471AP2/ERF domain
PRINTSPR003673.0E-10119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MPKTASLTHS SLTQQVFKKD LKMKLVANNP LFQALHHTLV IYFSSSTFSS SSSSPSAMKD  60
STKQVSQNSS KRNQDPNNYE SDKQAKRRGN AGRHPSYRGV RMRQWGKWVS EIRQPKKKSR  120
IWLGTFSTPE MAARAHDVAA LTIKGHSAHL NFPELAHEFP RPASSSPKDI QAAAALAATL  180
SCKTSQKGRE TEAEAELMLP RSLDSTLASN ETQEYSLNSP LRDDDDDTFI DLPDILQGIS  240
HQFDEFCYLS PWQPVGTETS DVGFWHHEEP SLWEYQSSRN IY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1788159675Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G079300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559260.0EF155926.1 Populus trichocarpa TINY-like protein (TINYL7) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303364.11e-170ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ77e-49ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA9PL761e-169A9PL76_POPTR; TINY-like protein
STRINGPOPTR_0003s07700.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.12e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]