PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G077200.1 | ||||||||
Common Name | POPTR_0003s07490g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 266aa MW: 29497 Da PI: 6.7682 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 201 | 223 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H Potri.003G077200.1 201 FECPYCFKVFGSGQALGGHKRSH 223 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.1E-7 | 3 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.912 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.40.10 | 5.1E-4 | 144 | 212 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57667 | 7.74E-7 | 158 | 223 | No hit | No description |
Pfam | PF13912 | 0.083 | 158 | 178 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 54 | 158 | 178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.058 | 158 | 188 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-11 | 201 | 224 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 201 | 223 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 201 | 223 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 203 | 223 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MERHKCKLCV RTFPNGRALG GHMKAHLAAT RQQLGGLDRN ESFSSSYSSS SDPEFSFTVD 60 AGSVVVQDRE SETESRNPTR RRSKRIRKSC AEPEPVSSVS DTSPEEDVAR CLMMLSRDVW 120 MRNIEEEYEE QGGKDGERSV EMLEEAEEIK VSKIRGKFRC EKCMKLFRSS RALSGHKRIC 180 SLNATEVRRF AGSADANDRI FECPYCFKVF GSGQALGGHK RSHLIGSSTS ISGVVEASTK 240 LENNLIDLNL PAPVEDDEFS VVSDA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G077200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452722.1 | 1e-165 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A2K2B391 | 0.0 | A0A2K2B391_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s07490.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 | Representative plant | OGRP2404 | 10 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 8e-49 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G077200.1 |
Entrez Gene | 7471627 |