PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G071700.1 | ||||||||
Common Name | POPTR_0003s06930g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 377aa MW: 41745.3 Da PI: 4.6479 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.5 | 1.6e-18 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g Potri.003G071700.1 116 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDSEARRIRG 165 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.5E-21 | 116 | 175 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.79E-32 | 116 | 174 | No hit | No description |
PROSITE profile | PS51032 | 23.525 | 116 | 173 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-32 | 116 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-36 | 116 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.1E-11 | 117 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MCGGAIISDF IAPTTTARSS RRLTSGFEWL ELKKPFNNKH LKPVVADPED DFEADFQEFK 60 DESDVDEDYD VFADAKPFAF SASVSEPAQK RGLPRSKSAG FSGPAEKSAK RKRKNQFRGI 120 RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDSEA RRIRGKKAKV NFPDEAPCAS 180 ARHPIKENSQ KRLTKANLSQ DFSYLSNPET DYNNMGFVEE KPQVSQFGLM NSFPAIGDSG 240 VTPLTPSDNA SMYFNSDKGS NSFDCDFGWG EQGPEILSVL AATPEVDESV FVDANPKKLK 300 SYSENAVPVE EKNGKSLSEE LLAFDNQLMN LQMPDLVGNW EASLDSFLNG DTTQDGTNAV 360 DLWSFEDFPS MVGGVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 115 | 181 | 13 | 80 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.16554 | 0.0 | bud| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in seedlings, leaves, flowers, siliques and germinating seeds. {ECO:0000269|PubMed:22020282}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G071700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146299 | 0.0 | EF146299.1 Populus trichocarpa clone WS0116_P10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452250.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Refseq | XP_024452251.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Swissprot | Q9SSA8 | 1e-72 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A9PDD2 | 0.0 | A9PDD2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s06930.2 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 5e-71 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G071700.1 |
Entrez Gene | 7483575 |