PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G069700.2
Common NamePOPTR_0003s06730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 486aa    MW: 56134.3 Da    PI: 9.586
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G069700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07402421525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         lCr+fa+ G C+yG +CkF H
  Potri.003G069700.2 402 LCRYFAQ-GRCHYGHNCKFVH 421
                         9******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.308.7E-986133IPR003034SAP domain
SuperFamilySSF689063.3E-787133No hitNo description
PfamPF020373.3E-799132IPR003034SAP domain
SMARTSM003560.0028397423IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906397424IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6398422IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6400425IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5401421IPR000571Zinc finger, CCCH-type
SMARTSM003560.02424449IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6425448IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-6427453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263428450IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MVTYKQKKPQ DEQEEEVYST ESGGSDPDYD SDTDPSYSII EETRSNLSRL SIKKKSKSRV  60
AKDLDLSFDK DPGEKETKLA EVDEKSYEEV QKIIQAGKLE GLKVEQCKVY LRKNKLRLTG  120
KKDTLIQRIK EHQEILSGGG EKKYPISSFV LDCKGDACRG DIVMFDQNVY DKYNIASRSA  180
MGPPIGTRMV AGKIVQESYG AAKQQHTFTI EVLWSKGENP LPPLHPLLIK GRNLYRMKTL  240
RQRWEDEGER RKILLEKHLR GSLARSSRET RIQEKEGRKM LRVERALKKE ETNKSRSHLN  300
PRTSLTNGLS RMDQRQPLKC ADSYRPMGSP HRQGCEQPKL HANRGENDYR GQVPGNSVEY  360
SDIQDDFCSR SPNFCRKPLA SIHNSSPIRS PHRQGGDQQI QLCRYFAQGR CHYGHNCKFV  420
HESREGQLCR YFAQGRCYYG HDCKFVHESR EGREQRREES GGPCSPRREE WPTNPRRLER  480
RPYLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G069700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826920.0AC182692.2 Populus trichocarpa clone Pop1-44B2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452914.10.0zinc finger CCCH domain-containing protein 62 isoform X2
TrEMBLA0A2K2B2U90.0A0A2K2B2U9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06730.10.0(Populus trichocarpa)