PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G069700.1
Common NamePOPTR_0003s06730g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 516aa    MW: 59516.4 Da    PI: 9.257
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G069700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07432451525
                         --SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                         lCr+fa+ G C+yG +CkF H
  Potri.003G069700.1 432 LCRYFAQ-GRCHYGHNCKFVH 451
                         9******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689063.66E-6108149No hitNo description
Gene3DG3DSA:1.10.720.301.1E-6110149IPR003034SAP domain
PfamPF020373.5E-7115148IPR003034SAP domain
SMARTSM003560.0028427453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906427454IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6428452IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-6430455IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-5431451IPR000571Zinc finger, CCCH-type
SMARTSM003560.02454479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6455478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5457483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263458480IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MVTYKQKKPQ DEQEEEVYST ESGGSDPDYD SDTDPSYSII EETRSNLSRL SIKKKSKSRV  60
AKDLDLSFDK DPGEKETKLA EVDEKSYEEV QKIIQDSLRL GFDFLLCDVM EAGKLEGLKV  120
EQCKVYLRKN KLRLTGKKDT LIQRIKEHQE ILSGGGEKKY PISSFVLDCK GDACRGDIVM  180
FDQNVYDKYN IASRSAMGPP IGTRMVAGKI VQESYGAAKQ QHTFTKMNTC MLIFLCNGGI  240
EVLWSKGENP LPPLHPLLIK GRNLYRMKTL RQRWEDEGER RKILLEKHLR GSLARSSRET  300
RIQEKEGRKM LRVERALKKE ETNKSRSHLN PRTSLTNGLS RMDQRQPLKC ADSYRPMGSP  360
HRQGCEQPKL HANRGENDYR GQVPGNSVEY SDIQDDFCSR SPNFCRKPLA SIHNSSPIRS  420
PHRQGGDQQI QLCRYFAQGR CHYGHNCKFV HESREGQLCR YFAQGRCYYG HDCKFVHESR  480
EGREQRREES GGPCSPRREE WPTNPRRLER RPYLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G069700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826920.0AC182692.2 Populus trichocarpa clone Pop1-44B2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452913.10.0zinc finger CCCH domain-containing protein 62 isoform X1
TrEMBLA0A2K2B2U20.0A0A2K2B2U2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224
Representative plantOGRP451266