PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G064700.1
Common NamePOPTR_0003s06330g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 565aa    MW: 62656.9 Da    PI: 8.3382
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G064700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.55.8e-12266322155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Potri.003G064700.1 266 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 322
                         78*******************433.44555535555.779999**************98 PP
2AP248.12.9e-15365416155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.003G064700.1 365 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 416
                         78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-14266332IPR016177DNA-binding domain
PfamPF008474.8E-9266322IPR001471AP2/ERF domain
CDDcd000181.56E-18266330No hitNo description
PROSITE profilePS5103217.332267330IPR001471AP2/ERF domain
SMARTSM003801.1E-22267336IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-12267331IPR001471AP2/ERF domain
PRINTSPR003673.8E-6268279IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17365425IPR016177DNA-binding domain
CDDcd000185.17E-24365423No hitNo description
PfamPF008475.7E-10365416IPR001471AP2/ERF domain
SMARTSM003802.2E-32366430IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18366423IPR001471AP2/ERF domain
PROSITE profilePS5103218.808366424IPR001471AP2/ERF domain
PRINTSPR003673.8E-6406426IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MSKWLGFSLT PHLRIDEGFG REDQAPGFSV MPLRSDGSLC VFDPFRRPSN GAPDWRYENT  60
MDGGSTSEDG PKLEDFLGCY SNSPSNETKV HCQQEDHQSH QNHANRINVD LAPSFNTNGD  120
VKTGENSLTS RSSSIQSYHF NDNPQTSIPS HCLQHCDLNH SHSHNHNHNH ESGMNHVPFE  180
SASSVSGFKS WLRQTAPFSS SGKSPIEANN SNFQSLLLTM SPSSQNGLAT ISPLQVVDNR  240
KRPVVKSLAK EPVSHKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQTRKGRQ  300
GGYDKEEKAA RAYDLAALKY WGPTTHINFP LNTYEKELEE MKHMTRQEFV ASLRRKSSGF  360
SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGTSAV  420
TNFGIRRYDV KRICSSSKLI ASDLAKRSTK DSAPVALEDY NSCASSTSSQ PHFAIASSEA  480
SHELTDMMWS ENTGEHQQQQ SANNNNNGVT LVASTSRNPP IAASPKCSVG LASDFGLGSE  540
SYSQGYFPLQ GGKHQVPMFA LWND*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G064700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175880.0AC217588.1 Populus trichocarpa clone POP047-P10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304138.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X4
SwissprotQ1PFE11e-135AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLB9GW200.0B9GW20_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-132AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]