PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G063700.8 | ||||||||
Common Name | POPTR_0003s06240g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 580aa MW: 64037 Da PI: 9.7927 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.3e-09 | 466 | 514 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r Rt ++k++w+++l Potri.003G063700.8 466 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 514 7****************************99**99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.464 | 459 | 518 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-13 | 461 | 518 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-9 | 463 | 516 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.22E-19 | 465 | 515 | No hit | No description |
SuperFamily | SSF46689 | 6.43E-16 | 465 | 520 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-7 | 466 | 514 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MLQKVKEEQR LRLACGSPYC SSAYLIVDSQ CCDQHDKLLH IDAKLQCEIP LQETVPSLAP 60 SLSESHFNQS GSFGECSHSS DKLVAGGSTL SVVTTKPDFS KLKGEICLDN LSIKELHETF 120 KATFGRETTV KDKQWLKRRI SMGLTNSCDV SVTSFIIKDN KLVKKGNGEI SNCMDGSYAE 180 DPPIGNQKDL PTSLVSQLDY HQVVPEKRLE NPNLDDNSGS DDHQTEQRAA KRARKPTKRY 240 IEELSEVESK ESNGRLMNLA KNSGHGLISL KSHVRLVRNV PLGGRTVVTR LDSLGGYGIQ 300 VPCVSRVRRS RPRKNFMALL KFNPSGMGME ATVKKALGDH SFPPDDGKES RVLKASSTPE 360 HVHHQKFNPS GMGMEATLVK KALGDHSFPL DDGKESRVLK ASSTPEHVHH QFIGVPEKDK 420 QFSVMSAIGL GHNTELKCIN SSRDSDDNVV TVPTPKGGIR RKHHRAWTLS EVMKLVEGVS 480 RYGAGRWSEI KRLAFASYSY RTSVDLKDKW RNLLKASLAP QDNGMNSRKS TGAMPIPAPI 540 LLKVRELAEM QAQVLPNLSS TKIAGSTRKN VHEKQTGFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 307 | 313 | RRSRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G063700.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM424467 | 5e-43 | AM424467.2 Vitis vinifera contig VV78X123394.14, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453604.1 | 0.0 | uncharacterized protein LOC7475702 isoform X6 | ||||
TrEMBL | A0A2K2B2G6 | 0.0 | A0A2K2B2G6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s06240.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 3e-91 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G063700.8 |
Entrez Gene | 7475702 |