PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G063700.7
Common NamePOPTR_0003s06240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 535aa    MW: 59168.5 Da    PI: 9.8226
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G063700.7genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.5e-09421469348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Potri.003G063700.7 421 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 469
                         7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.464414473IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-13416473IPR009057Homeodomain-like
SMARTSM007172.9E-9418471IPR001005SANT/Myb domain
SuperFamilySSF466895.76E-16420475IPR009057Homeodomain-like
CDDcd116602.19E-19420470No hitNo description
PfamPF002496.0E-7421469IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MLQKVKEEQR LRLACGSPYC SSAYLIVDSQ CCDQHDKLLH IDAKLQCEIP LQETVPSLAP  60
SLSESHFNQS GSFGECSHSS DKLVAGGSTL SVVTTKPDFS KLKGEICLDN LSIKELHETF  120
KATFGRETTV KDKQWLKRRI SMGLTNSCDV SVTSFIIKDN KLVKKGNGEI SNCMDGSYAE  180
DPPIGNQKDL PTSLVSQLDY HQVVPEKRLE NPNLDDNSGS DDHQTEQRAA KRARKPTKRY  240
IEELSEVESK ESNGRLMNLA KNSGHGLISL KSHVRLVRNV PLGGRTVVTR LDSLGGYGIQ  300
VPCVSRVRRS RPRKNFMALL KFNPSGMGME ATLVKKALGD HSFPLDDGKE SRVLKASSTP  360
EHVHHQFIGV PEKDKQFSVM SAIGLGHNTE LKCINSSRDS DDNVVTVPTP KGGIRRKHHR  420
AWTLSEVMKL VEGVSRYGAG RWSEIKRLAF ASYSYRTSVD LKDKWRNLLK ASLAPQDNGM  480
NSRKSTGAMP IPAPILLKVR ELAEMQAQVL PNLSSTKIAG STRKNVHEKQ TGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307313RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G063700.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4244675e-43AM424467.2 Vitis vinifera contig VV78X123394.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453605.10.0uncharacterized protein LOC7475702 isoform X7
TrEMBLA0A2K2B2H70.0A0A2K2B2H7_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-95TRF-like 6