PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G063700.5
Common NamePOPTR_0003s06240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 649aa    MW: 71224.7 Da    PI: 8.7365
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G063700.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.4e-09535583348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Potri.003G063700.5 535 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 583
                         7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.464528587IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-13530587IPR009057Homeodomain-like
SMARTSM007172.9E-9532585IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-16534589IPR009057Homeodomain-like
CDDcd116602.87E-19534584No hitNo description
PfamPF002497.8E-7535583IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
METVVEVEGN DEAKLKECGI RNSTSSLSSP KQISDPVVYK LVRLEGDGRI VPATDDELME  60
VESLLIDDKC EMHIYADPGQ TVGCISNEGS SSGIAQLESL EGLLQSRNKE ADPDKLNARL  120
EETVPSLAPS LSESHFNQSG SFGECSHSSD KLVAGGSTLS VVTTKPDFSK LKGEICLDNL  180
SIKELHETFK ATFGRETTVK DKQWLKRRIS MGLTNSCDVS VTSFIIKDNK LVKKGNGEIS  240
NCMDGSYAED PPIGNQKDLP TSLVSQLDYH QVVPEKRLEN PNLDDNSGSD DHQTEQRAAK  300
RARKPTKRYI EELSEVESKE SNGRLMNLAK NSGHGLISLK SHVRLVRNVP LGGRTVVTRL  360
DSLGGYGIQV PCVSRVRRSR PRKNFMALLK FNPSGMGMEA TVKKALGDHS FPPDDGKESR  420
VLKASSTPEH VHHQKFNPSG MGMEATLVKK ALGDHSFPLD DGKESRVLKA SSTPEHVHHQ  480
FIGVPEKDKQ FSVMSAIGLG HNTELKCINS SRDSDDNVVT VPTPKGGIRR KHHRAWTLSE  540
VMKLVEGVSR YGAGRWSEIK RLAFASYSYR TSVDLKDKWR NLLKASLAPQ DNGMNSRKST  600
GAMPIPAPIL LKVRELAEMQ AQVLPNLSST KIAGSTRKNV HEKQTGFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376382RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G063700.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292441e-105CT029244.1 Poplar cDNA sequences.
GenBankCT0295441e-105CT029544.1 Poplar cDNA sequences.
GenBankCT0295451e-105CT029545.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453597.10.0uncharacterized protein LOC7475702 isoform X1
RefseqXP_024453598.10.0uncharacterized protein LOC7475702 isoform X1
TrEMBLA0A2K2B2H60.0A0A2K2B2H6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-107TRF-like 6