PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G063700.2
Common NamePOPTR_0003s06240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 603aa    MW: 66227 Da    PI: 8.7392
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G063700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.6e-09489537348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Potri.003G063700.2 489 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 537
                         7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.464482541IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-13484541IPR009057Homeodomain-like
SMARTSM007172.9E-9486539IPR001005SANT/Myb domain
SuperFamilySSF466896.8E-16488543IPR009057Homeodomain-like
CDDcd116602.59E-19488538No hitNo description
PfamPF002497.1E-7489537IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
METVVEVEGN DEAKLKECGI RNSTSSLSSP KQISDPVVYK LVRLEGDGRI VPATDDELME  60
VESLLIDDKC EMHIYADPGQ TVGCISNEGS SSGIAQLESL EGLLQSRNKE ADPDKLNARL  120
EETVPSLAPS LSESHFNQSG SFGECSHSSD KLVAGGSTLS VVTTKPDFSK LKGEICLDNL  180
SIKELHETFK ATFGRETTVK DKQWLKRRIS MGLTNSCDVS VTSFIIKDNK LVKKGNGEIS  240
NCMDGSYAED PPIGNQKDLP TSLVSQLDYH QVVPEKRLEN PNLDDNSGSD DHQTEQRAAK  300
RARKPTKRYI EELSEVESKE SNGRLMNLAK NSGHGLISLK SHVRLVRNVP LGGRTVVTRL  360
DSLGGYGIQV PCVSRVRRSR PRKNFMALLK FNPSGMGMEA TVKKALGDHS FPPDDGKESR  420
VLKASSTPEH VHHQFIGVPE KDKQFSVMSA IGLGHNTELK CINSSRDSDD NVVTVPTPKG  480
GIRRKHHRAW TLSEVMKLVE GVSRYGAGRW SEIKRLAFAS YSYRTSVDLK DKWRNLLKAS  540
LAPQDNGMNS RKSTGAMPIP APILLKVREL AEMQAQVLPN LSSTKIAGST RKNVHEKQTG  600
FL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376382RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G063700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292441e-105CT029244.1 Poplar cDNA sequences.
GenBankCT0295441e-105CT029544.1 Poplar cDNA sequences.
GenBankCT0295451e-105CT029545.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453601.10.0uncharacterized protein LOC7475702 isoform X4
TrEMBLA0A2K2B2H00.0A0A2K2B2H0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-111TRF-like 6