PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G056000.1
Common NamePOPTR_0003s05470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 414aa    MW: 47342.3 Da    PI: 4.2913
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G056000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix452.8e-14179263286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt++e+ +L++a  ++  + ++++l+   W+ev++k+ ++ ++er+ +qC+++++ l+k+yk +k    +   +  s+++yf++l+
  Potri.003G056000.1 179 WTERETFVLLDAWGDKFLQRGKKSLRSDEWQEVAEKVsEKSKIERTDTQCRNRLDTLKKKYKVEKIKLAEA-GGGASKWVYFKKLD 263
                         *************************************555688*******************999999986.677779******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-4141149IPR009057Homeodomain-like
PfamPF138374.6E-21178263No hitNo description
PROSITE profilePS500906.319179236IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.2E-4204246IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDDTEDDARY PPNPYGENNQ KSYGSNRHKL LAGNAMYLRE VDDQYSIDED EDSDEEEEDE  60
HELGVEDGEN NQKTGIHYEG KDVDEEEEEE EEGVDDEEDE DDNQKYNRRI DEDEDDNEKY  120
NMRIDDDDDD GDIERHPKKQ KLKSLVSSYE FAPRVPAPHV AVPAGPKPSV GGRNPLTDWT  180
ERETFVLLDA WGDKFLQRGK KSLRSDEWQE VAEKVSEKSK IERTDTQCRN RLDTLKKKYK  240
VEKIKLAEAG GGASKWVYFK KLDILMSTSA QQGGLSCGLD SGEYVFMNSK AYSNHANGLD  300
GMRDSPGNSE SAHDDDDSDG LPPKKRRLGR ESRNCNEQSS FGLLADSIQK FSEIYEKIES  360
SKRQQMLELE KMKMDFQRDL EMEKRQIIER AKAEIAKIHQ DSEDEDTMSA NSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G056000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247870.0CU224787.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453662.10.0trihelix transcription factor ASIL1
TrEMBLA0A2K2B2140.0A0A2K2B214_POPTR; Uncharacterized protein
STRINGPOPTR_0003s05470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-64Trihelix family protein