PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G052400.1
Common NamePOPTR_0003s05100g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 760aa    MW: 84384.4 Da    PI: 6.4662
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G052400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21106161156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Potri.003G052400.1 106 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 161
                         7999************************************************9877 PP
2START227.92.9e-712734981206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                         e+a++a++el k+a+a+ep+W +s+    e++n+de++++f ++++       +s+ea+r+++vv+ +l++lv++++d++ +W+e+++   
  Potri.003G052400.1 273 EIANQAMEELKKMATAGEPLWIRSVetgrEILNYDEYTKEFGSENSsnngrpkRSIEASRETRVVFVDLPRLVQSFMDVN-RWKEMFPcli 362
                         57899************************************8887799********************************.********** PP

                         .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
               START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          ka+t++vi++g      ga+qlm+ae q+l+p+vp R+++fvRy++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksng
  Potri.003G052400.1 363 sKAATVDVICNGeganrnGAVQLMFAEVQMLTPMVPtREVYFVRYCKQLNAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNG 452
                         ******************************************************************98.9********************* PP

                         EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         h+kv+wveh +++++ +h ++r +v+sgla+ga++w atlq qce+
  Potri.003G052400.1 453 HCKVIWVEHLECQKSAVHTMFRTVVHSGLAFGARHWIATLQLQCER 498
                         ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-2392157IPR009057Homeodomain-like
SuperFamilySSF466899.19E-2195164IPR009057Homeodomain-like
PROSITE profilePS5007118.22103163IPR001356Homeobox domain
SMARTSM003898.3E-19105167IPR001356Homeobox domain
PfamPF000461.0E-18106161IPR001356Homeobox domain
CDDcd000869.19E-17110161No hitNo description
PROSITE patternPS000270138161IPR017970Homeobox, conserved site
PROSITE profilePS5084839.893264501IPR002913START domain
SuperFamilySSF559616.59E-33266498No hitNo description
CDDcd088751.13E-110268497No hitNo description
Gene3DG3DSA:3.30.530.202.0E-5272493IPR023393START-like domain
SMARTSM002341.2E-72273498IPR002913START domain
PfamPF018521.0E-56273498IPR002913START domain
SuperFamilySSF559616.59E-15528746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MGVDMSNPPN SHIKDFFASP ALSLSLAGIF RGANVSHSAA AGSVEVEEGD EGSGGGRREE  60
TVEISSETSG PMRSRSDDDL EGEGEHDEDD GDGDGDDADK NKKKKRKKYH RHTAEQIREM  120
EALFKESPHP DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKTEMDKLR  180
EENKTMRETI NKACCPNCGT ATTSRGTALT TEEQQLRIEN AKLKAEVEKL RVVIGKYSPG  240
ATASCSAEND QENRSSLDFY TGIFGLDKTR ITEIANQAME ELKKMATAGE PLWIRSVETG  300
REILNYDEYT KEFGSENSSN NGRPKRSIEA SRETRVVFVD LPRLVQSFMD VNRWKEMFPC  360
LISKAATVDV ICNGEGANRN GAVQLMFAEV QMLTPMVPTR EVYFVRYCKQ LNAEQWAIVD  420
VSIDKVEDNI DASLVKCRKR PSGCIIEDKS NGHCKVIWVE HLECQKSAVH TMFRTVVHSG  480
LAFGARHWIA TLQLQCERLV FFMATNVPTK DSTGVATLAG RKSILKLAQR MTWSFCRAIG  540
ASSYHTWSKV SSKTGEDIRI SSRKNLNEPG EPVGLILCAV SSVWLPVPPH ILFDFLRDEA  600
RRNEWDIMSN GGPVQATANL AKGQDRGNAV TILKMKSKEN NMWVLQDSCT NAYESMVIYA  660
PVDTNGMQSV INGCDSSNLA ILPSGFSILP DGHESRPLVI TSRQEEKSTE GGSLLTIAFQ  720
ILTNTSPTAK LTMESVESVN ALISCTLKNI KTSLQCEDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKKKRK
2101107KKKKRKK
3103107KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.131650.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G052400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304207.20.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLB9GXB60.0B9GXB6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s05100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Representative plantOGRP9080913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]