PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G048700.1 | ||||||||
Common Name | POPTR_0003s04700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Whirly | ||||||||
Protein Properties | Length: 230aa MW: 25117.9 Da PI: 10.2402 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 199.8 | 3.6e-62 | 53 | 189 | 1 | 137 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 sv+k+kaal+v++v+ptf++ sgnl+++r+G+++l++ +a++erkyd+ek+q+falsatev++l++ ++k+sceffhdp++ +sn+G+vr Potri.003G048700.1 53 SVFKGKAALSVEPVLPTFSKFGSGNLRVDRRGSMMLTFLPAIGERKYDYEKRQKFALSATEVGSLISTGPKDSCEFFHDPSMLSSNAGQVR 143 79***************************************************************************************** PP Whirly 92 kalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 k l+++P++dGsG+fv+lsv n+++k+ e+f+vPv+ aef+vl+++ Potri.003G048700.1 144 KNLSIKPHADGSGYFVSLSVVNNILKTTERFTVPVTTAEFTVLKTA 189 *******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 3.1E-74 | 43 | 205 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 3.22E-65 | 46 | 227 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 4.5E-59 | 54 | 188 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MMKLSRFLNF NRNAVGKPTD VRDGSALHAL TFQASISTGG KSSIQDRVFA PYSVFKGKAA 60 LSVEPVLPTF SKFGSGNLRV DRRGSMMLTF LPAIGERKYD YEKRQKFALS ATEVGSLIST 120 GPKDSCEFFH DPSMLSSNAG QVRKNLSIKP HADGSGYFVS LSVVNNILKT TERFTVPVTT 180 AEFTVLKTAC SFALPHIMGW DRLTTPLPGT LASKLSKVDP QMPDLEWDK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 5e-92 | 47 | 207 | 10 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 5e-92 | 47 | 207 | 10 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 5e-92 | 47 | 207 | 10 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 5e-92 | 47 | 207 | 10 | 170 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.3139 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G048700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146025 | 0.0 | EF146025.1 Populus trichocarpa clone WS0115_A07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303313.2 | 1e-170 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 3e-97 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A9PCM9 | 1e-168 | A9PCM9_POPTR; Whirly family protein | ||||
STRING | cassava4.1_015441m | 1e-117 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11383 | 33 | 38 | Representative plant | OGRP2316 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 2e-98 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G048700.1 |
Entrez Gene | 7483546 |
Publications ? help Back to Top | |||
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