PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G046700.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 40743.4 Da PI: 7.8823 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.7 | 2.9e-50 | 39 | 164 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + Potri.003G046700.2 39 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMI 128 79***************************.89***************8778899************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +glkktLvfy+g+apkg +t+W+m+eyrl Potri.003G046700.2 129 RTENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 164 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.48 | 38 | 185 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.53E-55 | 38 | 184 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-25 | 40 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MAIAATMSHN TNNEQNNNNN DCNSNSNNKD DDHEHDMVMP GFRFHPTEEE LVEFYLRRKV 60 EGKRFNVELI TFLDLYRYDP WELPALAAIG EKEWFFYVPR DRKYRNGDRP NRVTTSGYWK 120 ATGADRMIRT ENSRSIGLKK TLVFYSGKAP KGIRTSWIMN EYRLPHHETE RYQKVEISLC 180 RVYKRAGVED HPSLPRSLPS RASSSRGPQS DKKHQSHLTL ERFQPFVGQS SQQIEMEKMS 240 ETDASSSSDV TTALGLSKHN IDDLHRLLNY QQASINHHHH QQQQQQQQFY LLQQPQHQSS 300 QLSSMTPQTS QQLPLNMLPE LLPPTFPDRL WEWNQMPEAN RDFNNPFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-56 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-56 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-56 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-56 | 40 | 185 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-56 | 40 | 185 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-56 | 40 | 185 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G046700.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024452941.1 | 0.0 | NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVP8 | 1e-119 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A2K2B1L0 | 0.0 | A0A2K2B1L0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s03670.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 1e-108 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G046700.2 |
Publications ? help Back to Top | |||
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