PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G039700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 338aa    MW: 38203.6 Da    PI: 6.2833
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G039700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.62.7e-40701691100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am+++++++++ra+dPv G++++i++lq+q+e ++
  Potri.003G039700.1  70 ACAACKYQRRKCAPDCILAPYFPHNRQRQFLNAHKLFGVSNISKIIKNLNPPEKDEAMRTIIFQSDVRANDPVGGCYRMIRELQRQIEYTR 160
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ael+ + ++
  Potri.003G039700.1 161 AELDFVLHQ 169
                         ***988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.11469170IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3770165IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
RDPWFVGREK RKDLKAAAER KRREKPFLNK KTAPAPPATH PNSLVISKTT IANSKNMSNI  60
SRTGNSTTQA CAACKYQRRK CAPDCILAPY FPHNRQRQFL NAHKLFGVSN ISKIIKNLNP  120
PEKDEAMRTI IFQSDVRAND PVGGCYRMIR ELQRQIEYTR AELDFVLHQL AIYRAQAAAQ  180
QQTQLIQAQA AAAAAAAAPD HQTDHDCQSI IITDTFDMYD PVMQYHDQYP QEHQDQQEFV  240
IHNPDNNQLH LQDQDPANAW ATAANVQDIS NLSISSSPNY LDDQLKQAYN GDDHCSTQDD  300
NLKPILDVND DVNFEPDDQD QVVDMRFVPS TQLLMSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-267117312114LOB family transfactor Ramosa2.1
5ly0_B2e-267117312114LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823ERKRRE
21924RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G039700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164670.0AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385440.20.0LOB domain-containing protein 20
TrEMBLA0A2K2B1890.0A0A2K2B189_POPTR; Uncharacterized protein
STRINGPOPTR_0003s04520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Representative plantOGRP55241021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.19e-59LOB domain-containing protein 22