PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G037300.1
Common NamePOPTR_0003s04520g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 282aa    MW: 31893.3 Da    PI: 4.6674
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G037300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.82.5e-4014112199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+++am+++++++++ra+dPv G++++i++lq+q+e ++
  Potri.003G037300.1  14 ACAACKYQRRKCAPDCILAPYFPHNRQRQFLNAHKLFGVSNISKIIKNLNPPEKDEAMRTIIFQSDVRANDPVGGCYRMIRELQRQIEYTR 104
                         7****************************************************************************************** PP

              DUF260  92 aelallke 99 
                         ael+ + +
  Potri.003G037300.1 105 AELDFVLH 112
                         **998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.94413114IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3714109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MSNISRTGNS TTQACAACKY QRRKCAPDCI LAPYFPHNRQ RQFLNAHKLF GVSNISKIIK  60
NLNPPEKDEA MRTIIFQSDV RANDPVGGCY RMIRELQRQI EYTRAELDFV LHHLAIYRAQ  120
AAAQQQTQLI QAQAAAAAAA AAPDHQTDHD CQSIIITDTF DMYDPVMQYH DQYPQEHQDQ  180
QEFVIHNPDN NQLHLQDQDP ANAWATAANV QDISNLSISS SPNYLDDQLK QTYNGDDHCS  240
TQDDNLKPIL DVNDDVNFEP DDQDQVVDMR FVPSTQLLMS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-271510812105LOB family transfactor Ramosa2.1
5ly0_B6e-271510812105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G037300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164670.0AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453372.10.0LOB domain-containing protein 20-like
TrEMBLA0A3N7FLW60.0A0A3N7FLW6_POPTR; Uncharacterized protein
STRINGPOPTR_0003s04520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Representative plantOGRP55241021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-58LOB domain-containing protein 22