PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G036900.3
Common NamePOPTR_0003s04470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 514aa    MW: 55509.4 Da    PI: 9.5844
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G036900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156181323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C++C+k F r  nL+ H r H
  Potri.003G036900.3 61 CEICNKGFQRDQNLQLHRRGH 81
                        *******************88 PP
2zf-C2H213.20.00027135157123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H +t+
  Potri.003G036900.3 135 WKCVKCSKRYAVQSDWKAHAKTC 157
                         58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.46E-65881No hitNo description
PROSITE profilePS5015710.8245981IPR007087Zinc finger, C2H2
SMARTSM003550.115981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM00355140100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.46E-6130155No hitNo description
SMARTSM00355250135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MMLSNRNETG TNYGVQQYFA PPAQTQPPVK KKRNLPGNPD PDAEVIALSP TTLMATNRFL  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TSKEVRKKVY VCPEPNCVHH DPSRALGDLT  120
GIKKHFCRKH GEKKWKCVKC SKRYAVQSDW KAHAKTCGTR EYRCDCGTLF SRRDSFITHR  180
AFCEALAEES ARAITGAPGQ FLSTQPGSST PRINLQVPQF SGQDLHAFSL KKEQQSSFRS  240
RPDFPPWLAC PPGLGGPGPP HQQTPIDLLS SSSSPSILST RLGQEFTPTH QDMSPNPNPS  300
LGPTLPQFPS GPSPHMSATA LLQKAAQMGA TVSSKTTGLM RPHHHQQQQE QAHVSANADN  360
VSNTNTAVFG LNLSSREELA SGGLFFSGLA PFGNKAGPTV PSGASSTGAL PSGALIEDMM  420
SSLSSASGFE GTSLEDALAS GVLNSKKDVN FSYSLSKTTR NDNGGGSSGG NEGMTRDFLG  480
LRPLSHSDIL SMAGLSNCVN TSHEQQIHKP WKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34131192364Zinc finger protein JACKDAW
5b3h_F2e-34131192364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18597KLKQRTSKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.120611e-150bud| catkin
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G036900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2129270.0AC212927.1 Populus trichocarpa clone POP017-N15, complete sequence.
GenBankAC2164670.0AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452436.10.0protein indeterminate-domain 7
RefseqXP_024452437.10.0protein indeterminate-domain 7
RefseqXP_024452438.10.0protein indeterminate-domain 7
RefseqXP_024452440.10.0protein indeterminate-domain 7
RefseqXP_024452449.10.0protein indeterminate-domain 7
RefseqXP_024452450.10.0protein indeterminate-domain 7
RefseqXP_024452451.10.0protein indeterminate-domain 7
RefseqXP_024452452.10.0protein indeterminate-domain 7
TrEMBLA0A2K2B1300.0A0A2K2B130_POPTR; Uncharacterized protein
STRINGPOPTR_0003s04470.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-114C2H2 family protein