PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.003G036900.2

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 546aa MW: 59001.2 Da PI: 9.3286

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.003G036900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	93	113	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H Potri.003G036900.2 93 CEICNKGFQRDQNLQLHRRGH 113 *******************88 PP
2	zf-C2H2	13.1	0.00029	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Potri.003G036900.2 167 WKCVKCSKRYAVQSDWKAHAKTC 189 58******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.08E-5	90	113	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.6E-5	90	113	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.11	91	113	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.824	91	113	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2
SMART	SM00355	140	132	162	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.2E-4	155	188	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.08E-5	162	187	No hit	No description
SMART	SM00355	250	167	187	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MMKSLMFHQQ QQQILQEENM SNLTSASGDQ ASVSSGNRNE TGTNYGVQQY FAPPAQTQPP 60 VKKKRNLPGN PDPDAEVIAL SPTTLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK 120 QRTSKEVRKK VYVCPEPNCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCV KCSKRYAVQS 180 DWKAHAKTCG TREYRCDCGT LFSRRDSFIT HRAFCEALAE ESARAITGAP GQFLSTQPGS 240 STPRINLQVP QFSGQDLHAF SLKKEQQSSF RSRPDFPPWL ACPPGLGGPG PPHQQTPIDL 300 LSSSSSPSIL STRLGQEFTP THQDMSPNPN PSLGPTLPQF PSGPSPHMSA TALLQKAAQM 360 GATVSSKTTG LMRPHHHQQQ QEQAHVSANA DNVSNTNTAV FGLNLSSREE LASGGLFFSG 420 LAPFGNKAGP TVPSGASSTG ALPSGALIED MMSSLSSASG FEGTSLEDAL ASGVLNSKKD 480 VNFSYSLSKT TRNDNGGGSS GGNEGMTRDF LGLRPLSHSD ILSMAGLSNC VNTSHEQQIH 540 KPWKG*

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MMKSLMFHQQ QQQILQEENM SNLTSASGDQ ASVSSGNRNE TGTNYGVQQY FAPPAQTQPP  60
VKKKRNLPGN PDPDAEVIAL SPTTLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRTSKEVRKK VYVCPEPNCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCV KCSKRYAVQS  180
DWKAHAKTCG TREYRCDCGT LFSRRDSFIT HRAFCEALAE ESARAITGAP GQFLSTQPGS  240
STPRINLQVP QFSGQDLHAF SLKKEQQSSF RSRPDFPPWL ACPPGLGGPG PPHQQTPIDL  300
LSSSSSPSIL STRLGQEFTP THQDMSPNPN PSLGPTLPQF PSGPSPHMSA TALLQKAAQM  360
GATVSSKTTG LMRPHHHQQQ QEQAHVSANA DNVSNTNTAV FGLNLSSREE LASGGLFFSG  420
LAPFGNKAGP TVPSGASSTG ALPSGALIED MMSSLSSASG FEGTSLEDAL ASGVLNSKKD  480
VNFSYSLSKT TRNDNGGGSS GGNEGMTRDF LGLRPLSHSD ILSMAGLSNC VNTSHEQQIH  540
KPWKG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	6e-34	163	224	3	64	Zinc finger protein JACKDAW
5b3h_F	6e-34	163	224	3	64	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	129	KLKQRTSKEVRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.12061	1e-149	bud\| catkin

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.003G036900.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212927	0.0	AC212927.1 Populus trichocarpa clone POP017-N15, complete sequence.
GenBank	AC216467	0.0	AC216467.1 Populus trichocarpa clone POP034-D10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452436.1	0.0	protein indeterminate-domain 7
Refseq	XP_024452437.1	0.0	protein indeterminate-domain 7
Refseq	XP_024452438.1	0.0	protein indeterminate-domain 7
Refseq	XP_024452440.1	0.0	protein indeterminate-domain 7
Refseq	XP_024452449.1	0.0	protein indeterminate-domain 7
Refseq	XP_024452450.1	0.0	protein indeterminate-domain 7
Refseq	XP_024452451.1	0.0	protein indeterminate-domain 7
Refseq	XP_024452452.1	0.0	protein indeterminate-domain 7
Swissprot	Q8H1F5	1e-127	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2K2B130	0.0	A0A2K2B130_POPTR; Uncharacterized protein
STRING	POPTR_0003s04470.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-125	indeterminate(ID)-domain 7

Link Out ? help Back to Top
Phytozome	Potri.003G036900.2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]