PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.003G014800.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 370aa    MW: 41809.1 Da    PI: 7.4049
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.003G014800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_121.45.6e-072412761752
                         HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                         A+rsR RK+++i+eLe+ v++L+a+ ++   ele  
  Potri.003G014800.2 241 AQRSRVRKLQYIAELERNVQALQAKGSEVSAELEFV 276
                         89**********************999888888755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0053230289IPR004827Basic-leucine zipper domain
CDDcd147031.18E-14232280No hitNo description
SuperFamilySSF579595.34E-5241283No hitNo description
Gene3DG3DSA:1.20.5.1706.1E-5241283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MENSKGSANI RNLMYSGKHP LLPPKSPFPS VSPSYIDHVP SNSFGSKTAQ KPREGNTHHQ  60
RTSSETLFIE EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDVANASN IDYAEQDDYM  120
YKNVMSIPSW RSHDFDHHQD VRQASLYSEM NLTKQKNRVW DSSLNAPTFP SSLSSVRENA  180
GMQSSGSSCA PREADCVSES EKQDPLDGPH DPKISLEKKD SSNSKSSASD TDTKRAKQQF  240
AQRSRVRKLQ YIAELERNVQ ALQAKGSEVS AELEFVNQQN LILSMENKAL KQRLENLAQE  300
QLIKYLEHEV LEREIGRLRA LYQQQQQQPQ QMKPSSHRRS NSRDLDSQFA NLSMNANSSR  360
DPVTGSLRI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.96230.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.003G014800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1478880.0EF147888.1 Populus trichocarpa clone WS0125_L14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452234.10.0uncharacterized protein At4g06598
SwissprotQ8W3M71e-67Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A2K2AZZ80.0A0A2K2AZZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0003s01040.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-102bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ralph SG, et al.
    Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.
    BMC Genomics, 2008. 9: p. 57
    [PMID:18230180]