PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.003G014500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 96aa MW: 11277.8 Da PI: 9.9595 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23.1 | 1.6e-07 | 3 | 39 | 17 | 53 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 A+rsR RK+++++eLe+ v++L+a+ ++ ele + Potri.003G014500.1 3 AQRSRVRKLQYTAELERNVQALQAKGSEVSAELEFVN 39 89***********************999988887655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-5 | 3 | 43 | No hit | No description |
SuperFamily | SSF57959 | 6.96E-6 | 3 | 45 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 96 aa Download sequence Send to blast |
QFAQRSRVRK LQYTAELERN VQALQAKGSE VSAELEFVNQ QNLILSMENK ALKQRLENLA 60 QEQLIKYLEH EVLEREIGRL RALYQQQQQQ RSHSK* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.9623 | 1e-139 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vascular tissues of leaves, stems and siliques, anthers, filaments, tapetum, mature pollen grains, pistil vascular tissues and papillar cells, and funiculi. {ECO:0000269|PubMed:19449183}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.003G014500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF147888 | 1e-136 | EF147888.1 Populus trichocarpa clone WS0125_L14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007869.1 | 5e-49 | PREDICTED: uncharacterized protein At4g06598-like | ||||
Swissprot | F4IN23 | 2e-21 | BZP34_ARATH; Basic leucine zipper 34 | ||||
TrEMBL | A0A2K2AZZ4 | 1e-57 | A0A2K2AZZ4_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | cassava4.1_009724m | 2e-46 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5123 | 26 | 37 | Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G58110.2 | 2e-42 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.003G014500.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|