PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.003G001000.1 | ||||||||
Common Name | POPTR_0003s00890g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 661aa MW: 73555.5 Da PI: 6.2389 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.8 | 1.8e-22 | 123 | 223 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F Potri.003G001000.1 123 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL- 210 99****************************964333..4459************************************************. PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 + +++el+v+v+r Potri.003G001000.1 211 -RGENGELRVGVRR 223 .449999*****97 PP | |||||||
2 | Auxin_resp | 108.3 | 8.6e-36 | 249 | 331 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t++ F+v+Y+Pr+s+seF+v+++k+ +a ++k+svGmRfkm+fe+e+++err+sGt+vgv d ++ W +S+WrsLk Potri.003G001000.1 249 ASHAIVTGTLFSVFYKPRTSRSEFIVNLNKYIEAQNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNISSGWADSEWRSLK 331 6899*****************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.76E-44 | 113 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.9E-41 | 120 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.15E-21 | 121 | 223 | No hit | No description |
Pfam | PF02362 | 2.6E-20 | 123 | 223 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.279 | 123 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-21 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-34 | 249 | 331 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.1E-7 | 526 | 570 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 25.456 | 534 | 627 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.05E-9 | 537 | 611 | No hit | No description |
Pfam | PF02309 | 2.9E-6 | 578 | 624 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MNHTSGGNPH PGGCNDALYK ELWHACAGPL VTLPCEGERV YYFPQGHMEQ LEASMHQGME 60 QQMPSFNLPS KILCKVVNVQ RRAEPETDEV YAQITLLPEP DQSEVTSPDP PLPEPERCTV 120 HSFCKTLTAS DTSTHGGFSV LRRHADDCLP PLDMSQQPPW QELVATDLHG NEWHFRHIFR 180 GQPRRHLLTT GWSVFVSSKK LVAGDAFIFL RGENGELRVG VRRLMRQQTN MPSSVISSQS 240 MHLGVLATAS HAIVTGTLFS VFYKPRTSRS EFIVNLNKYI EAQNHKLSVG MRFKMRFEGE 300 EVPERRFSGT IVGVGDNISS GWADSEWRSL KVHWDEPSSI LRPERVSPWD LEPLVATTPS 360 NSQPMQRNKR PRPSVLPSPT ANLSALGMWK PSVESSAFSY GESQRGRDPY PSPNFSTTAK 420 ANSLSFCGNS QVTSVSPNSM YRPNQVESVT DSFAPVVNKD LGERRQGTGI GYRLFGIQLI 480 DNFNAEGTSP VVTVSGTVGN DRPVVSLEAE SDQHSEPEKS CLRSHQELQS RQIRSCTKVH 540 MQGVAVGRAV DLTQFEHYED LLRKLEEMFD IEGELSGSTK KWQVVYTDNE DDMMKVGDDP 600 WHEFCSMVKK IFIYASEEVK RLSPKIKLSG DEEIKGDSAN ANADASVNTE DRSSVVGPGC 660 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 2 | 354 | 5 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 2 | 354 | 5 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 2 | 354 | 5 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 368 | 372 | KRPRP |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.003G001000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM113035 | 0.0 | KM113035.1 Populus davidiana x Populus alba var. pyramidalis auxin response factor 1 family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006385188.1 | 0.0 | auxin response factor 1 | ||||
Refseq | XP_024453403.1 | 0.0 | auxin response factor 1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A1L6K471 | 0.0 | A0A1L6K471_POPTO; Auxin response factor | ||||
TrEMBL | U5GHK9 | 0.0 | U5GHK9_POPTR; Auxin response factor | ||||
STRING | POPTR_0003s00890.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6802 | 26 | 38 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Potri.003G001000.1 |
Entrez Gene | 18096589 |
Publications ? help Back to Top | |||
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