PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G263600.1 | ||||||||
Common Name | POPTR_0002s26430g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 502aa MW: 53204.9 Da PI: 9.158 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Potri.002G263600.1 71 FVCEICNKGFQRDQNLQLHRRGH 93 89*******************88 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 147 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Potri.002G263600.1 147 WKCERCSKKYAVQSDWKAHLKTC 169 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.4E-5 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.0E-5 | 71 | 93 | IPR022755 | Zinc finger, double-stranded RNA binding |
SuperFamily | SSF57667 | 4.82E-7 | 71 | 93 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 83 | 112 | 142 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.8E-5 | 135 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.82E-7 | 142 | 167 | No hit | No description |
SMART | SM00355 | 130 | 147 | 167 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MVGGENLSRI TVSKASGEDT ISNVSSFGNQ GMPHSITVPP PKKKRNLPGM PDPDAEVVAL 60 SPKTLVATIR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKEPRKR VYVCPESSCV 120 HHNPARALGD LTGIKKHFYR KHGEKKWKCE RCSKKYAVQS DWKAHLKTCG TKEYKCDCGT 180 LFSRRDSFVT HRAFCDALAE ESARAQTLAI MGREGNGCDI KRVGASPPPP PLTPSTSVVS 240 PGLSVQSSEL AENPIGLSPP PIACASATST SSTSSTSNVF ATTFASSTAT PAAIPQQASV 300 PSSFPNLFCG LARSDYPTTM PTPRAIEPPS LSLSPSFYLS NNTSSLFSTE QEHYHYTPSP 360 QPAMSATALL QKAAQMGATT SNPSFLRGLG LPRSTNQDSN CNKWDVKPEN NTTVAAGLGL 420 GLPSSDVMMG SSSLFGNKPA TLDLLGLGMD AASSALLNSY SGGFNVGAAT AAAYGGGGGR 480 GTSEETWDGV PERKPYGSTG A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-36 | 143 | 209 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 8e-36 | 143 | 209 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}. | |||||
Uniprot | TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G263600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386940.1 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9LVQ7 | 1e-136 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | U5GU12 | 0.0 | U5GU12_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s26430.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2218 | 32 | 86 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-112 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G263600.1 |
Entrez Gene | 18096584 |
Publications ? help Back to Top | |||
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