PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G255700.1
Common NamePOPTR_0002s25700g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 406aa    MW: 46326.2 Da    PI: 7.5392
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G255700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.1e-171152344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        i  +  r  tf kR++g+lKKA+E S+LC+++++viif+++ 
  Potri.002G255700.1 11 IRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKE 52
                        56677899*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.31E-19188IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.054153IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-20166IPR002100Transcription factor, MADS-box
CDDcd002661.12E-23270No hitNo description
PRINTSPR004046.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-181153IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGQKRIKMEL IRKEKSRMLT FRKRKAGLLK KASEFSILCG VDACVIIFGP KEKDDHQPVA  60
PETWPPSSEE VRCIINRYKG SDQPRRCYQV SDYFADKKKQ IDSELARLHK QIIKAKYPAW  120
DDRLNRLYAD QLRVIVGHLD AKIDLADKKL GSFNVNQYVM GAPGVQAASL SPSVSHDMES  180
YMKSRDDNFL QLIHNSNPFD AQPPMVFYPE QSSHVTNLLE RKYSNGYSTD LQVYYEPRPL  240
DDQLPVDFQS KQTSHGTTRN ASFWESNNDN CYSTDLQLYL EPNPLNVQPP MHFQPKQNAH  300
RTSSYLHAME DAIMKMACDP NTSDQFGCKL SSSSNLPCAN RTPWMWDNVW YNNADSSVSY  360
IAPTKQPIMP SIQFPMSSFP HQMQSSEASD FTGNLEFEGK GQGYN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G255700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2977060.0KC297706.1 Populus tomentosa AGL24 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301840.20.0MADS-box transcription factor 3
TrEMBLB9GRC00.0B9GRC0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s25700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Representative plantOGRP3677621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-29M-type_MADS family protein