PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G230200.1 | ||||||||
Common Name | POPTR_0002s23080g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 766aa MW: 83840.9 Da PI: 5.7827 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.7e-20 | 96 | 151 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Potri.002G230200.1 96 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 151 688999***********************************************999 PP | |||||||
2 | START | 220.5 | 5.3e-69 | 285 | 505 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela +a++el+++a+ +ep+W+ s +n+de++++f+ + + ++ ea+r+s+vv+m++ +lve l+d++ qW++ + + Potri.002G230200.1 285 ELAVAAMEELIRMAQMDEPLWMNSLdgidAVLNEDEYIRIFPHGIGpkptgFKCEASRESAVVIMNHINLVEYLMDVN-QWSTLFSgivsR 374 57899********************999999**********99999********************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 a tlev+s+g galq+m+ae+q+++plvp R++++vRy++q+ +g+w++vdvS+ds ++ p +R++++pSg+li++++ng+s Potri.002G230200.1 375 ALTLEVLSTGvagnynGALQVMTAEFQLPTPLVPtRESYYVRYCKQHADGTWAVVDVSLDSIRPGPA----ARCRRRPSGCLIQEMPNGYS 461 ******************************************************************5....******************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kvtwvehv++++r +h+l+++lv+sg+a+gak+wvatl+rqce+ Potri.002G230200.1 462 KVTWVEHVEVDDRGVHNLYKHLVSSGHAFGAKRWVATLNRQCER 505 ******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 74 | 151 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.3E-19 | 84 | 153 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 93 | 153 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.8E-20 | 94 | 157 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.3E-18 | 96 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.73E-19 | 96 | 154 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 128 | 151 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 8.24E-36 | 276 | 507 | No hit | No description |
PROSITE profile | PS50848 | 44.182 | 276 | 508 | IPR002913 | START domain |
CDD | cd08875 | 6.09E-128 | 280 | 504 | No hit | No description |
SMART | SM00234 | 1.1E-65 | 285 | 505 | IPR002913 | START domain |
Pfam | PF01852 | 8.9E-59 | 286 | 505 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.2E-6 | 381 | 503 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.08E-24 | 524 | 757 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 766 aa Download sequence Send to blast |
MPAGVMIPAR NMPSMIGVNG NVGGFGSSSG LALGQIMFQP NMMEGHEFHH LDMTHNTSEG 60 DMTRIRDEEF DSTNTKSGSE NQEGASGDDQ DPRPKKKRYH RHTQHQIQEM EAFFKECPHP 120 DDKQRKELSR ELGLEPLQVK FWFQNKRTQM KTQHERHENT QLRNENEKLR ADNMRYREAL 180 SNASCPNCGG PTAIGEMSFD EHHLRLENTR LREEIDRISA IAARYVGKPV VNYPVLSPPM 240 PPRPVDLGVG NFGGQPGLGG DIYEAGDLLR SISAPTEADK PMIIELAVAA MEELIRMAQM 300 DEPLWMNSLD GIDAVLNEDE YIRIFPHGIG PKPTGFKCEA SRESAVVIMN HINLVEYLMD 360 VNQWSTLFSG IVSRALTLEV LSTGVAGNYN GALQVMTAEF QLPTPLVPTR ESYYVRYCKQ 420 HADGTWAVVD VSLDSIRPGP AARCRRRPSG CLIQEMPNGY SKVTWVEHVE VDDRGVHNLY 480 KHLVSSGHAF GAKRWVATLN RQCERLASAM ATNIPAGDAG VITNQEGRKS MMKLAERMVI 540 SFCAGVSAST AHTWTTLSGT GADDVRVMTR KSVDDPGRPP GIVLSAATSF WLPVPPKRVF 600 DFLRDENTRN EWDILSNGGV VQEMAHIANG RDTGNCVSLI RVNSANSSQS NMLILQESCT 660 DQTASFVIYA PVDIVAMNVV LNGGDPDYVA LLPSGFAIFP DGTAAHGVGM DESGSTGGSL 720 LTVAFQILVD SVPTAKLSLG SVATVNNLIA CTVERIKASL SCESA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.3572 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G230200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216677 | 1e-161 | AC216677.1 Populus trichocarpa clone POP103-G02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450360.1 | 0.0 | homeobox-leucine zipper protein HDG2 isoform X1 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A2K2BN31 | 0.0 | A0A2K2BN31_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s23080.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G230200.1 |
Entrez Gene | 7489907 |