PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G228700.1
Common NamePOPTR_0002s21300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 482aa    MW: 53381.3 Da    PI: 7.2758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G228700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.23e-161865148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT  Ed +l+++vk++G g+W+++ + + + R++k+c++rw ++l
  Potri.002G228700.1 18 KGPWTVAEDAILIEYVKKHGEGNWNSVQKNFRLMRCGKSCRLRWANHL 65
                        79******************************************9986 PP

2Myb_DNA-binding537.9e-1771114146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++T++E+++++++++++G++ W++ a+ ++ gRt++++k++w++
  Potri.002G228700.1  71 KGSFTPDEEKIIIELHAKHGNK-WARMASQLP-GRTDNEIKNYWNT 114
                         799*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.6541365IPR017930Myb domain
SuperFamilySSF466892.13E-3015112IPR009057Homeodomain-like
SMARTSM007172.3E-141767IPR001005SANT/Myb domain
PfamPF002493.9E-151865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-241972IPR009057Homeodomain-like
CDDcd001672.21E-122065No hitNo description
PROSITE profilePS5129425.13966120IPR017930Myb domain
SMARTSM007178.3E-1770118IPR001005SANT/Myb domain
PfamPF002496.4E-1671114IPR001005SANT/Myb domain
CDDcd001672.07E-1273114No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2673118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MESGQATAPK GFNQGLKKGP WTVAEDAILI EYVKKHGEGN WNSVQKNFRL MRCGKSCRLR  60
WANHLRPNLK KGSFTPDEEK IIIELHAKHG NKWARMASQL PGRTDNEIKN YWNTRMKRHQ  120
RAGLPIYPQD FQAKTAAVRF HHQEGRRTQP NSTSLSSSPY NLCFPPLDPI NSFATPLNPL  180
QNHLSPLAFY SNPSHQLKLF ANTNSNDGCL PLSLPPVSSY QQSPLSTNLF SQNPTRQAAP  240
INTPPSVLFY NDADMESNMS FTSLIMGGQV QPIGFIPSGQ TPPGPTTSWG GGACFEEASN  300
KSNNNGYSNS ETSQQGMAGN MNNSGLLDAL LQEAKTISFK GKSNSDDLLP ASNEGKRAMD  360
STVKEEGEKL WDDLSSSQSS NIWTKPSEEA ADQELNSMDD DFISLLNNFP SSEPLPEWYR  420
QSRNERNSNR MPYSGLNIVD DNRDPDVKED ASLTRASNTE AVPNRGRALV SCHWNNMPGI  480
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30161185106B-MYB
1h8a_C7e-301011819126MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G228700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301620.20.0transcription factor MYB101
TrEMBLA0A2K2BMY50.0A0A2K2BMY5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s21300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-72myb domain protein 101