PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G228700.1 | ||||||||
Common Name | POPTR_0002s21300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 482aa MW: 53381.3 Da PI: 7.2758 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 3e-16 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+++vk++G g+W+++ + + + R++k+c++rw ++l Potri.002G228700.1 18 KGPWTVAEDAILIEYVKKHGEGNWNSVQKNFRLMRCGKSCRLRWANHL 65 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.9e-17 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+++++++++++G++ W++ a+ ++ gRt++++k++w++ Potri.002G228700.1 71 KGSFTPDEEKIIIELHAKHGNK-WARMASQLP-GRTDNEIKNYWNT 114 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.654 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-30 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-14 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-15 | 18 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-24 | 19 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.21E-12 | 20 | 65 | No hit | No description |
PROSITE profile | PS51294 | 25.139 | 66 | 120 | IPR017930 | Myb domain |
SMART | SM00717 | 8.3E-17 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-16 | 71 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.07E-12 | 73 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-26 | 73 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MESGQATAPK GFNQGLKKGP WTVAEDAILI EYVKKHGEGN WNSVQKNFRL MRCGKSCRLR 60 WANHLRPNLK KGSFTPDEEK IIIELHAKHG NKWARMASQL PGRTDNEIKN YWNTRMKRHQ 120 RAGLPIYPQD FQAKTAAVRF HHQEGRRTQP NSTSLSSSPY NLCFPPLDPI NSFATPLNPL 180 QNHLSPLAFY SNPSHQLKLF ANTNSNDGCL PLSLPPVSSY QQSPLSTNLF SQNPTRQAAP 240 INTPPSVLFY NDADMESNMS FTSLIMGGQV QPIGFIPSGQ TPPGPTTSWG GGACFEEASN 300 KSNNNGYSNS ETSQQGMAGN MNNSGLLDAL LQEAKTISFK GKSNSDDLLP ASNEGKRAMD 360 STVKEEGEKL WDDLSSSQSS NIWTKPSEEA ADQELNSMDD DFISLLNNFP SSEPLPEWYR 420 QSRNERNSNR MPYSGLNIVD DNRDPDVKED ASLTRASNTE AVPNRGRALV SCHWNNMPGI 480 C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 16 | 118 | 5 | 106 | B-MYB |
1h8a_C | 7e-30 | 10 | 118 | 19 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G228700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301620.2 | 0.0 | transcription factor MYB101 | ||||
TrEMBL | A0A2K2BMY5 | 0.0 | A0A2K2BMY5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s21300.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9949 | 32 | 40 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 4e-72 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G228700.1 |
Entrez Gene | 7489898 |