PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G228400.1

Common Name

POPTR_0002s21330g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 618aa MW: 66846.8 Da PI: 6.7938

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G228400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.7e-30	339	397	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+H h+ Potri.002G228400.1 339 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILTTTYEGNHSHP 397 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-32	323	399	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-27	332	399	IPR003657	WRKY domain
PROSITE profile	PS50811	28.587	333	399	IPR003657	WRKY domain
SMART	SM00774	2.2E-35	338	398	IPR003657	WRKY domain
Pfam	PF03106	4.2E-26	340	397	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MAKGSGGLSI DSDPIATSGY FLHKSTVLTS FPEENINPKW KHLAATSARQ SMDVKANRSP 60 PSTFQFPVKL INTNEHDHDH DPDSSLPSDN RRRTVIDEMD FFADKKHDVD RMTIINNGTG 120 DLKDSGSPAG LELNVNTGLN LLTTNTSSEQ STVDDGVSSN MEDKRAKSEL AVLRAEVERM 180 KVENLRLKGM LNHVTSNYNA LQMDLVTLMQ DQNSHHKNEQ RDGKNKDDGV VPRQCMDLGL 240 VAAAGGDDTD DHSLSTSEGG RRRDRSRSSG NNAENNNEDG TVFEQDKKGT DQREESPDQG 300 WGSNKAARFN STKTVDQTEA TIRKARVSVR ARSEDATISD GCQWRKYGQK MAKGNPCPRA 360 YYRCTMAAGC PVRKQVQRCA EDRTILTTTY EGNHSHPLPP AATAMASTTS SAARMLLSGS 420 MSSTDGLMNS NFLTRTILPC SSSLATISAS APFPTVTLDL TQNPSPLQLP KQPIQFQFPF 480 PNPPQNLATA SAAALLPQIL GQALYNQSKS FGLQMSQEMQ PNRLDHQSQP ALQQGQKNSL 540 ADSLTTATAA IAADPNFTAA LAAAITSIIG GAHQNNINSI NNVQTTTSNN NSNGNITTSN 600 NNSYGHNKIT NSSFPSD*

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MAKGSGGLSI DSDPIATSGY FLHKSTVLTS FPEENINPKW KHLAATSARQ SMDVKANRSP  60
PSTFQFPVKL INTNEHDHDH DPDSSLPSDN RRRTVIDEMD FFADKKHDVD RMTIINNGTG  120
DLKDSGSPAG LELNVNTGLN LLTTNTSSEQ STVDDGVSSN MEDKRAKSEL AVLRAEVERM  180
KVENLRLKGM LNHVTSNYNA LQMDLVTLMQ DQNSHHKNEQ RDGKNKDDGV VPRQCMDLGL  240
VAAAGGDDTD DHSLSTSEGG RRRDRSRSSG NNAENNNEDG TVFEQDKKGT DQREESPDQG  300
WGSNKAARFN STKTVDQTEA TIRKARVSVR ARSEDATISD GCQWRKYGQK MAKGNPCPRA  360
YYRCTMAAGC PVRKQVQRCA EDRTILTTTY EGNHSHPLPP AATAMASTTS SAARMLLSGS  420
MSSTDGLMNS NFLTRTILPC SSSLATISAS APFPTVTLDL TQNPSPLQLP KQPIQFQFPF  480
PNPPQNLATA SAAALLPQIL GQALYNQSKS FGLQMSQEMQ PNRLDHQSQP ALQQGQKNSL  540
ADSLTTATAA IAADPNFTAA LAAAITSIIG GAHQNNINSI NNVQTTTSNN NSNGNITTSN  600
NNSYGHNKIT NSSFPSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-21	325	401	1	76	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.15491	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G228400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024450700.1	0.0	probable WRKY transcription factor 31
Swissprot	Q9C519	1e-136	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	A0A2K2BN03	0.0	A0A2K2BN03_POPTR; Uncharacterized protein
STRING	POPTR_0002s21330.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF866	34	121
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-109	WRKY family protein

Link Out ? help Back to Top
Phytozome	Potri.002G228400.1
Entrez Gene	7458300

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]