PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G223700.1
Common NamePOPTR_0002s21790g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 451aa    MW: 48781.5 Da    PI: 8.0593
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G223700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345e-115075126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        ++ + C +++rtG C yG++C+++H+
  Potri.002G223700.1 50 PGVPDCGYYLRTGLCGYGSNCRYNHP 75
                        5789*********************8 PP
2zf-CCCH33.95.5e-1194118327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C ++ +tGtCkyG++Ck++H++
  Potri.002G223700.1  94 QPDCGYYIKTGTCKYGSTCKYHHPR 118
                         789********************96 PP
3zf-CCCH34.82.8e-11140163427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         + C++++rt  Ck+G  CkF+H++
  Potri.002G223700.1 140 KSCPYYMRTRSCKFGVACKFHHPQ 163
                         66********************97 PP
4zf-CCCH34.63.1e-11287312227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++Cr+f+ +GtCkyG+ Ck++H++
  Potri.002G223700.1 287 DQPECRHFMSSGTCKYGSDCKYHHPK 312
                         689*********************96 PP
5zf-CCCH322.1e-10333357226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C++++ +G+Ck+G++C++ H+
  Potri.002G223700.1 333 GQAVCPDYSMYGICKFGPTCRYDHP 357
                         7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1414977IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-54976IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-85175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-55476IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.97691119IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-491118IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-894118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-696119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-497118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5135164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962136164IPR000571Zinc finger, CCCH-type
SMARTSM003560.029138163IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-4141162IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5285312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.399285313IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9287312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6288314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5291312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6330357IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7331358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037331359IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7333357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MPDQNNRQVK SNAVSNHSAD NIEEAFWRLK IHDPQEQGGM AQSSPYPDRP GVPDCGYYLR  60
TGLCGYGSNC RYNHPIYAAQ GTQLREELPE RIGQPDCGYY IKTGTCKYGS TCKYHHPRDR  120
NGAGPVSFNA LGLPMRQDEK SCPYYMRTRS CKFGVACKFH HPQPASLGTS LPLTGAAAFG  180
STGSPIVPSS GLPYVGGLPT WSLPRAPPYM SGTHLQGPQA YMPVVVSPSQ GIVPVPGWNT  240
YVGNSNPMSS SSILGSNRAY DSRNHGDSGS SGHLLSTAIP ALPERPDQPE CRHFMSSGTC  300
KYGSDCKYHH PKERIAQLAT NTMGPFGLPL RPGQAVCPDY SMYGICKFGP TCRYDHPLPT  360
YPYNYSLSLP SLSMMDSSLV TYPRMAQAAL SSATPVSLSK LPDLIRNPDG ASYNKHQNSD  420
SNTKTLDDPT EHAGSPPPHS SQASSEPSHD *
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G223700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302855.10.0zinc finger CCCH domain-containing protein 3
SwissprotQ94AD91e-116C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLB9GTS90.0B9GTS9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s21790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-115C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]