PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G221600.2
Common NamePOPTR_0002s22180g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 317aa    MW: 35060 Da    PI: 8.2031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G221600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.7e-29104161260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C+vkk++e+s+ d+k+ +i+Y geH+h+k
  Potri.002G221600.2 104 EDGYRWRKYGQKLVKGNEFIRSYYKCTHPSCQVKKQLECSH-DGKLADIVYIGEHEHPK 161
                         7***************************************9.***************85 PP
2WRKY105.33.3e-33218276159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+ +dpk+v++ Yeg+H+h+
  Potri.002G221600.2 218 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERAYNDPKLVITSYEGQHDHD 276
                         58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-2698162IPR003657WRKY domain
PROSITE profilePS5081122.46998162IPR003657WRKY domain
SuperFamilySSF1182909.42E-2499162IPR003657WRKY domain
SMARTSM007741.2E-32103161IPR003657WRKY domain
PfamPF031068.7E-23104160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-34204278IPR003657WRKY domain
SuperFamilySSF1182904.71E-29210278IPR003657WRKY domain
PROSITE profilePS5081134.589213278IPR003657WRKY domain
SMARTSM007741.8E-37218277IPR003657WRKY domain
PfamPF031067.4E-26219275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVSSEEVSPK ELQKRQSLDG GTDTAQQTRG SGGDASQQEG IPPSNAPEKR FENTGGRILQ  60
LDKEGSVSSL TPRKLSHTPG SDLHSLQSGQ ERWSPSIMRE KVSEDGYRWR KYGQKLVKGN  120
EFIRSYYKCT HPSCQVKKQL ECSHDGKLAD IVYIGEHEHP KPQLNLPQAV GCDLSTVEEK  180
PDNLLLTAVE GNSEKSPYYK PTGEPRLVIQ TKCEVDTVND GYRWRKYGQK LVKGNPNPRS  240
YYRCSSPGCP VKKHVERAYN DPKLVITSYE GQHDHDMPPS RTVAQNTTGL NTCTTTIQNG  300
VSGAKSGESD AISHFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-36102279275WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.133990.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G221600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2156240.0AC215624.1 Populus trichocarpa clone POP006-B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048957.11e-155PREDICTED: WRKY transcription factor 1
RefseqXP_011048958.11e-155PREDICTED: WRKY transcription factor 1
RefseqXP_011048960.11e-155PREDICTED: WRKY transcription factor 1
SwissprotQ93WV06e-67WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2K2BMP00.0A0A2K2BMP0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s22180.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-75zinc-dependent activator protein-1