PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G221600.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 369aa    MW: 40907.4 Da    PI: 7.4973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G221600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.2e-29104161260
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C+vkk++e+s+ d+k+ +i+Y geH+h+k
  Potri.002G221600.1 104 EDGYRWRKYGQKLVKGNEFIRSYYKCTHPSCQVKKQLECSH-DGKLADIVYIGEHEHPK 161
                         7***************************************9.***************85 PP
2WRKY104.94.2e-33270328159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+ +dpk+v++ Yeg+H+h+
  Potri.002G221600.1 270 VNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERAYNDPKLVITSYEGQHDHD 328
                         58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-2698162IPR003657WRKY domain
PROSITE profilePS5081122.46998162IPR003657WRKY domain
SuperFamilySSF1182901.22E-2399162IPR003657WRKY domain
SMARTSM007741.2E-32103161IPR003657WRKY domain
PfamPF031061.1E-22104160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-34256330IPR003657WRKY domain
SuperFamilySSF1182906.02E-29262330IPR003657WRKY domain
PROSITE profilePS5081134.589265330IPR003657WRKY domain
SMARTSM007741.8E-37270329IPR003657WRKY domain
PfamPF031069.3E-26271327IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MVSSEEVSPK ELQKRQSLDG GTDTAQQTRG SGGDASQQEG IPPSNAPEKR FENTGGRILQ  60
LDKEGSVSSL TPRKLSHTPG SDLHSLQSGQ ERWSPSIMRE KVSEDGYRWR KYGQKLVKGN  120
EFIRSYYKCT HPSCQVKKQL ECSHDGKLAD IVYIGEHEHP KPQLNLPQAV GCDLSTVEEK  180
PDNLLLTAVE ESQAPNPIEP TTTSQISTVT SSEYVKRVLS EPNRIRDEID DDQRSKQRKK  240
GNCNDDSTPL DKPTGEPRLV IQTKCEVDTV NDGYRWRKYG QKLVKGNPNP RSYYRCSSPG  300
CPVKKHVERA YNDPKLVITS YEGQHDHDMP PSRTVAQNTT GLNTCTTTIQ NGVSGAKSGE  360
SDAISHFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-35102331275WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.133990.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G221600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774220.0GQ377422.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048957.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_011048958.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_011048960.10.0PREDICTED: WRKY transcription factor 1
SwissprotQ9SI373e-80WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A2K2BMP00.0A0A2K2BMP0_POPTR; Uncharacterized protein
STRINGPOPTR_0002s22180.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.21e-82zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]