PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G214500.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 380aa    MW: 41664.7 Da    PI: 5.2994
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G214500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.4e-06444539
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                        +C+ ++e++   +C+++  +lC +C +  H+       H++
  Potri.002G214500.2  4 ICDFCGEQRSMVYCRSDAACLCLSCDQIVHSAnalskrHSR 44
                        7**************************99955667777765 PP
2CCT60.36.6e-21322365144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R  a++RY eK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  Potri.002G214500.2 322 RSDAVKRYMEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 365
                         889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.684147IPR000315B-box-type zinc finger
CDDcd000212.01E-7447No hitNo description
SMARTSM003365.3E-7447IPR000315B-box-type zinc finger
PfamPF062031.2E-15322364IPR010402CCT domain
PROSITE profilePS5101714.862322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGYICDFCGE QRSMVYCRSD AACLCLSCDQ IVHSANALSK RHSRTLLCER CNSQPALVRR  60
VEERISLCQN CDWMGYGSST SASTHKRQTI NCYFGCPSVS ELSSKWPFIL DFPSGGGSTC  120
EQELGLMSIA ENSTKNTLGP TENTICHNAS GIVGASSVPE SSSVPNNLDQ PTRSPNSSLP  180
KVCDADLYED FNMAEMDLNL ENYEELFGVT LNNSEELFEN GGIDSLFGTK DMPIVDSNFG  240
LVNTIQPTCS NAPSTDSMIS SKTEPILCFT AKQGHSSLSF SGLTGESNAE DYQDCGASSM  300
LLMGEPSWCP PCLESPLPSA NRSDAVKRYM EKKKTRKFEK KVRYASRKAR ADVRRRVKGR  360
FVKAGDAYDY DPLSQTRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G214500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2149950.0AC214995.1 Populus trichocarpa clone POP004-B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302823.30.0zinc finger protein CONSTANS-LIKE 9 isoform X1
RefseqXP_024451197.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
RefseqXP_024451198.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9SSE51e-152COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2K2BMB80.0A0A2K2BMB8_POPTR; Uncharacterized protein
STRINGEOX935730.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-126CONSTANS-like 9