PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G213400.2
Common NamePOPTR_0002s22800g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 678aa    MW: 75362.3 Da    PI: 5.5459
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G213400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.61.3e-05543603154
                         TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                         +rkRt ++++q+  +e++   ++ +  +a++ +  A+kl     ++t +q k+W  Nr+a+
  Potri.002G213400.2 543 KRKRTIMNDYQIALMEKALLDEPEMqrNAAALQSWADKLslngsEVTSSQLKNWLNNRKAR 603
                         79*****************99777722567899******9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-5532606IPR009057Homeodomain-like
PROSITE profilePS5007110.058540607IPR001356Homeobox domain
SMARTSM003893.5E-5542611IPR001356Homeobox domain
CDDcd000864.98E-5543606No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MDAAFGAVHV AIRFLQVKLS DQYTGLHAKS PTAEQIVNYI CQQCEASLQI LQSLCQQKVF  60
RERLLRNKEL CGRGGVLFLA RAILNLNVTP PFVDSFTVVA AISRLKAKVL SILLHLCEAE  120
SISYLDEVAS SPGSLDLAKS VVLEILELLK AALSKDPNHL SPCSDRTFPM GLLRLNAMRL  180
ADIFSDDSNF RSFITTCFTK VMTAIFSLPH GDFLSIWCSS EFPPREEDAT LEYDTFAAAG  240
WFLDTFAAAN LSNAINLEIT LIPSNMPQAM YAHQRTSLFV KLIANLHCFV PNICEEQERN  300
LFLHKFLECM RMDPSKSLPG FSFTSGAQRA VTVCRNLRSL LSHAESLIPN FLNEEDVQLL  360
RVFFNQLQSL INPADFEENQ VQEIKSERSI SLDKFSRLSI DEHLQEAQST RASSSPMARK  420
EPSSLNNRTD IQKEEMSENS AIQEEEKHNF RNEHMNQANV MRGDKAKSGA CASDVLREMD  480
RDSHNVETSG SDTSSTRGKT FVGQVVNGDL LKSSAHIKGS GCQGVRNGEK AESLHFEEKQ  540
PRKRKRTIMN DYQIALMEKA LLDEPEMQRN AAALQSWADK LSLNGSEVTS SQLKNWLNNR  600
KARLARAGKD VRAPMEVDIT FPENQVGQAL QHESPESPGE DNITSSVRGL QNTSEIGVYE  660
DPEAGIGLSD FVDIGAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1538544KQPRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G213400.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826651e-162AC182665.2 Populus trichocarpa clone Pop1-18D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451143.10.0nodulin homeobox isoform X1
RefseqXP_024451144.10.0nodulin homeobox isoform X2
RefseqXP_024451145.10.0nodulin homeobox isoform X3
TrEMBLA0A3N7EPH40.0A0A3N7EPH4_POPTR; Uncharacterized protein
TrEMBLA0A3N7ESX60.0A0A3N7ESX6_POPTR; Uncharacterized protein
TrEMBLA0A3N7FK320.0A0A3N7FK32_POPTR; Uncharacterized protein
STRINGPOPTR_0002s22800.10.0(Populus trichocarpa)