PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G208100.3 | ||||||||
Common Name | POPTR_0020s00320g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CO-like | ||||||||
Protein Properties | Length: 366aa MW: 40907.8 Da PI: 5.8433 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.3 | 5.7e-07 | 7 | 51 | 2 | 40 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++r C+ +++ + l+C+ ++ lC +C e H+ Ht++ Potri.002G208100.3 7 QKRLCDYCNDTTALLYCRADSAKLCFSCDHEVHSTnqlfskHTRS 51 7899******99*********************668888888875 PP | |||||||
2 | zf-B_box | 20.4 | 1.1e-06 | 52 | 91 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 C+ ++ ++++fC++ ++ +C++C e H + H Potri.002G208100.3 52 LLCDACHASPVSIFCQTEHSVFCQNCDWERH-SlsslsstH 91 57***************************99.435555555 PP | |||||||
3 | CCT | 59.8 | 8.9e-21 | 321 | 363 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ a++RYkeK+ktR+++K+irYesRK++Ae R R++GrF+k Potri.002G208100.3 321 RDSAISRYKEKKKTRRYSKHIRYESRKVRAEGRTRIRGRFAKM 363 899**************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.623 | 6 | 53 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.9E-13 | 6 | 53 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-5 | 7 | 51 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.33E-5 | 9 | 53 | No hit | No description |
PROSITE profile | PS50119 | 9.783 | 49 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 4.2E-5 | 52 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.56E-4 | 53 | 82 | No hit | No description |
SMART | SM00336 | 0.26 | 54 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 5.7E-15 | 321 | 363 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.396 | 321 | 363 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MKPRQQQKRL CDYCNDTTAL LYCRADSAKL CFSCDHEVHS TNQLFSKHTR SLLCDACHAS 60 PVSIFCQTEH SVFCQNCDWE RHSLSSLSST HIRRPIEGFT GCPSGNELMT ILGFEDLGLK 120 KSLFFSEESD GFLGSELDDG CSDLFLWDSP AVCIDDLIVS SDSGSNFQTL GVPPLPKNRN 180 AACGQHKEEI LCQLRELVRL KPDPYGNADI DPANILQSLD ADPQPPNLNT IGDPGAFTSY 240 KENLPDWLAD YGEAANQVLF LSTLPSSNFE ESCAVPDKEF NIIGSASHVH DDHAAEPQHL 300 TIETLPALPN VVTHELNSQE RDSAISRYKE KKKTRRYSKH IRYESRKVRA EGRTRIRGRF 360 AKMDH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G208100.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006389672.1 | 0.0 | zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | U7E1V5 | 0.0 | U7E1V5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0020s00320.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 2e-92 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G208100.3 |
Entrez Gene | 18111297 |