PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G207100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 336aa MW: 37729.2 Da PI: 7.1417 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 80.3 | 2e-25 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+ltpsd++++g +++pk++aee +++++ ++l +d++g +W++++iyr++++r++lt+GW+ F +++++ +gD+++F + Potri.002G207100.1 112 FTKKLTPSDTSTQGGFSVPKRHAEESlppldKSQQPPAQELLAKDLHGSEWRFRHIYRGQPKRHLLTGGWSTFISSKRVVAGDSFIFL--R 200 89****************************9444445569************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++el+v+v+r+ Potri.002G207100.1 201 GESGELRVGVRRA 213 49999*****996 PP | |||||||
2 | Auxin_resp | 64.3 | 4.3e-22 | 238 | 297 | 1 | 60 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrls 60 a+ha+st+s+F+++++P++s++eF++++++++k+ ++++s+G+Rf m+fe+e++ e+r++ Potri.002G207100.1 238 ASHAISTGSIFTIFFHPWTSPAEFIIPFDQYMKSAEIEYSIGTRFIMQFEGEECTEQRCQ 297 789******************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.03E-34 | 102 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-39 | 106 | 224 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-21 | 111 | 212 | No hit | No description |
PROSITE profile | PS50863 | 12.872 | 112 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.1E-21 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-23 | 112 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.5E-18 | 238 | 297 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
NKNDLYTELW YACAGPLVYV PRVGDKVFYF PQGHLEQVAA FLNEDSKTAM PIYDLPYKIL 60 CKVVHVQLKA EAKTDEVFAH ITLLPVAEGD ELSSNKDGES LLLHRKTRVL SFTKKLTPSD 120 TSTQGGFSVP KRHAEESLPP LDKSQQPPAQ ELLAKDLHGS EWRFRHIYRG QPKRHLLTGG 180 WSTFISSKRV VAGDSFIFLR GESGELRVGV RRAMKLENNL SANVVTAHSM QLGILSSASH 240 AISTGSIFTI FFHPWTSPAE FIIPFDQYMK SAEIEYSIGT RFIMQFEGEE CTEQRCQNFW 300 NILHSLTYLK ILGFLDLPTV NGILSVICDE FGRTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-120 | 3 | 295 | 17 | 307 | Auxin response factor 1 |
4ldw_A | 1e-120 | 3 | 295 | 17 | 307 | Auxin response factor 1 |
4ldw_B | 1e-120 | 3 | 295 | 17 | 307 | Auxin response factor 1 |
4ldx_A | 1e-120 | 3 | 295 | 17 | 307 | Auxin response factor 1 |
4ldx_B | 1e-120 | 3 | 295 | 17 | 307 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G207100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209190 | 1e-134 | AC209190.1 Populus trichocarpa clone POP078-N23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450843.1 | 0.0 | auxin response factor 2A isoform X1 | ||||
Swissprot | Q94JM3 | 1e-134 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | U7E327 | 0.0 | U7E327_POPTR; Auxin response factor | ||||
STRING | POPTR_0020s00210.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13105 | 23 | 29 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-136 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G207100.1 |