PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G199800.1 | ||||||||
Common Name | POPTR_0002s20080g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 148aa MW: 16627.2 Da PI: 9.683 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.4 | 3.5e-17 | 30 | 64 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+tt Tp+WR gp g++tLCnaCG+++rk+++ Potri.002G199800.1 30 CTDCQTTRTPCWRGGPAGPRTLCNACGIRQRKRRR 64 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.3E-14 | 24 | 85 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.886 | 24 | 60 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-12 | 25 | 64 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-13 | 27 | 63 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.57E-12 | 29 | 64 | No hit | No description |
Pfam | PF00320 | 9.8E-15 | 30 | 64 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 30 | 55 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MIMDLRTKGP ESEDMDNTHP SKCNEIKRRC TDCQTTRTPC WRGGPAGPRT LCNACGIRQR 60 KRRRALLGLD KGGPERSREK MAKGSNSSKL GVSLNLDLMG FKRDGMFQED WKRKLGEEEQ 120 AAILLMALSC GSVCAWYKKD EGKHFYP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 63 | RKRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G199800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF148247 | 0.0 | EF148247.1 Populus trichocarpa x Populus deltoides clone WS01312_C13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302743.2 | 1e-106 | GATA transcription factor 16 | ||||
TrEMBL | B9GSF0 | 1e-104 | B9GSF0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s20080.1 | 1e-105 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 8e-34 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G199800.1 |
Entrez Gene | 7460434 |