PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G197000.1 | ||||||||
Common Name | POPTR_0002s19810g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 92aa MW: 10595.1 Da PI: 8.5128 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.5 | 2.3e-13 | 20 | 86 | 31 | 98 |
.--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 +e t+ +d +g++W++++iyr+ ++r++l +GW++Fv+ ++ g + F+ ++r +f l + v+r Potri.002G197000.1 20 PE-ETILAKDVHGETWKFRHIYRGAPRRHLLNTGWSNFVNKKNSWLGTRLCFS-EQRiGTFVLEFDVLR 86 33.38999*********************************998777777777.455566666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.53 | 1 | 88 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.11E-14 | 9 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-15 | 10 | 76 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.56E-8 | 18 | 61 | No hit | No description |
Pfam | PF02362 | 5.1E-11 | 19 | 84 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MVPILESTTF SRLDYTAEPP EETILAKDVH GETWKFRHIY RGAPRRHLLN TGWSNFVNKK 60 NSWLGTRLCF SEQRIGTFVL EFDVLREGLV A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-17 | 10 | 70 | 184 | 244 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G197000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316370.3 | 1e-27 | auxin response factor 18 | ||||
Refseq | XP_011041011.1 | 1e-27 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q93YR9 | 5e-26 | ARFP_ARATH; Auxin response factor 16 | ||||
TrEMBL | B9GSR6 | 2e-61 | B9GSR6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s19810.1 | 3e-62 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15884 | 6 | 10 | Representative plant | OGRP526 | 15 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 2e-28 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G197000.1 |
Entrez Gene | 7460452 |