PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G195300.1
Common NamePOPTR_0002s19630g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 246aa    MW: 27692.5 Da    PI: 6.0446
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G195300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-3052110259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v++itY+++Hnh+
  Potri.002G195300.1  52 SDFWSWRKYGQKPIKGSPHPRGYYRCSTSkGCSAKKQVERCRTDASVLIITYTSNHNHP 110
                         699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-3245112IPR003657WRKY domain
SuperFamilySSF1182906.93E-2649112IPR003657WRKY domain
SMARTSM007748.4E-3651111IPR003657WRKY domain
PROSITE profilePS5081130.9452112IPR003657WRKY domain
PfamPF031063.6E-2553110IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDGSPSRKLD SNVSEHTQEI QTSKRRKVVE KTVVRVRIGK NAGKLKNEGP PSDFWSWRKY  60
GQKPIKGSPH PRGYYRCSTS KGCSAKKQVE RCRTDASVLI ITYTSNHNHP GPDLHESSLN  120
QQSKDPETPP TDHVDHPTTP KQEKPEEETE EGHGHPIVPS ADENASEGNS FHYLQSPIRI  180
SQDIMISQED PFAENPEKSH DTLGIVLDEE PISCSRLMTF SAPKSEENND FFDELEELPH  240
IFVFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-20531121879Disease resistance protein RRS1
5w3x_D2e-20531121879Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G195300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774230.0GQ377423.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301514.20.0probable WRKY transcription factor 69 isoform X1
RefseqXP_024451788.10.0probable WRKY transcription factor 69 isoform X1
TrEMBLB9GST50.0B9GST5_POPTR; WRKY family protein
STRINGPOPTR_0002s19630.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.18e-33WRKY DNA-binding protein 35