PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G193000.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 318aa    MW: 35402.5 Da    PI: 7.2135
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G193000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.53.2e-34158215259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp+vv++tYeg+H+h+
  Potri.002G193000.1 158 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFSDPSVVVTTYEGQHTHP 215
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381303.3E-1111317IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.808.2E-35142217IPR003657WRKY domain
SuperFamilySSF1182901.57E-29149217IPR003657WRKY domain
PROSITE profilePS5081131.961152217IPR003657WRKY domain
SMARTSM007741.3E-40157216IPR003657WRKY domain
PfamPF031069.2E-27158215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MERKEAVKVE NFVGSPTFSS TTDHVQTSYP FMQGFDFVDD KSSLGFMELL GVQDFSPSLL  60
DMMQVQIPSV QTPSAQVATE VVDSPPEVLN QPATPNSSSI SSASSEGLND EPANKGVDNE  120
VEEQGKTKKE LKPKKTNQKR QREPRFAFMT KSEVDHLEDG YRWRKYGQKA VKNSPFPRSY  180
YRCTTASCNV KKRVERSFSD PSVVVTTYEG QHTHPSPVMP RPNFTGSTSD SGFSSTAAFA  240
MPMQRRLSLY QQHQSQQQPP FPLVSLSPLG FGYNGSTTNA ANYLQYEKRF YTSPGSALLK  300
DHGLLQDLVP SHMLKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-28147218778Probable WRKY transcription factor 4
2lex_A2e-28147218778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G193000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774330.0GQ377433.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301524.30.0probable WRKY transcription factor 23 isoform X1
SwissprotO229001e-74WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A2K2BLA70.0A0A2K2BLA7_POPTR; WRKY transcription factor
STRINGPOPTR_0002s19390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-57WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]