PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G191800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 329aa    MW: 37093.6 Da    PI: 5.1925
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G191800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.5e-1758105148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+WT eEd ll+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  Potri.002G191800.1  58 KGPWTIEEDSLLAHYITIHGEGHWNSAARCAGLKRTGKSCRLRWLNYL 105
                         79********************************************97 PP
2Myb_DNA-binding48.12.7e-15111154146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Potri.002G191800.1 111 RGNITLQEQLLILQLHSRWGNR-WSKIAQMLP-GRTDNEIKNYWRT 154
                         7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.753105IPR017930Myb domain
SuperFamilySSF466899.36E-3054152IPR009057Homeodomain-like
SMARTSM007175.0E-1157107IPR001005SANT/Myb domain
PfamPF002497.1E-1458105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2059112IPR009057Homeodomain-like
CDDcd001672.27E-960105No hitNo description
PROSITE profilePS5129422.568106160IPR017930Myb domain
SMARTSM007179.5E-14110158IPR001005SANT/Myb domain
PfamPF002493.3E-14111154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-21113159IPR009057Homeodomain-like
CDDcd001673.85E-7131154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTNLSSLPSL SCIPTQNSNS NCASLAKFFI LEKEMDAQAR KHGYAGTLSE DQGMGIRKGP  60
WTIEEDSLLA HYITIHGEGH WNSAARCAGL KRTGKSCRLR WLNYLRPNVR RGNITLQEQL  120
LILQLHSRWG NRWSKIAQML PGRTDNEIKN YWRTRVQKQA KQLKCDVNSK QFRDTMRYVW  180
IPQLIQKIGA ESESPMDQPT ISPPTYYSSQ IDIPAAASES GSDLIDPNFM PDISVSSTLS  240
DSLDAQVSPW SDLTDYQNPP CGQYYSDCMQ NGSGLCPEND SGSWGWCQDG VDMQGMEQER  300
YGFIGGGDSL DQSLWNEENI WFLQQQLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-23581594104MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-23301604128MYB TRANSFORMING PROTEIN
1mse_C2e-23581594104C-Myb DNA-Binding Domain
1msf_C2e-23581594104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G191800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302787.10.0transcription factor MYB108
TrEMBLA0A3N7EJQ80.0A0A3N7EJQ8_POPTR; Uncharacterized protein
STRINGPOPTR_0002s19250.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-75myb domain protein 78