PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.002G186600.2 | ||||||||
Common Name | POPTR_0002s18770g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 367aa MW: 38962.1 Da PI: 8.4052 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.4e-30 | 126 | 184 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrC+++ gCpv+k+v+r+aed++++++tYeg+Hnh+ Potri.002G186600.2 126 SDGCQWRKYGQKMAKGNPCPRAYYRCSMTvGCPVRKQVQRCAEDKTILITTYEGNHNHP 184 7****************************9****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-33 | 110 | 186 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.01E-27 | 118 | 186 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.079 | 120 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 125 | 185 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 127 | 184 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 367 aa Download sequence Send to blast |
MQKQTQGCRV EQKGELNDTP TPVMSAQLLM DPRPSATLDA NIEPSVSYDK THEMLVSPTN 60 TMETKSQISG KRASIGDSNI DQTSQSLGSP KSPRLEEEKP NEQVPEVPFR KARVSVRARS 120 EAPLISDGCQ WRKYGQKMAK GNPCPRAYYR CSMTVGCPVR KQVQRCAEDK TILITTYEGN 180 HNHPLPPAAT VMANTTSAAA TMLLSGSTSS RESLSSSSGF YPSLPYASTM ATISASAPFP 240 TITLDLTNGP NTTMPFPCTS PSPVTFPFPL HGCPQLPGNP MYVAPKLPAI PSVQLGQRHG 300 SMVETVTAAI ASDPNFSAAL AAAISTCMGT PRSRDGSNNL STPSVIPGLP GSPVQIPQSC 360 TTFSTN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 112 | 188 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00115 | ampDAP | Transfer from AT4G01720 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.002G186600.2 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302808.1 | 0.0 | probable WRKY transcription factor 47 | ||||
Swissprot | Q9C519 | 3e-75 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2K2BKX8 | 0.0 | A0A2K2BKX8_POPTR; Uncharacterized protein | ||||
TrEMBL | B9GTA4 | 0.0 | B9GTA4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s18770.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01720.1 | 5e-70 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.002G186600.2 |
Entrez Gene | 7481448 |